Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30205
(370 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.) 153 4e-38
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 79 1e-15
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-05
SB_54467| Best HMM Match : GLTT (HMM E-Value=0.52) 32 0.17
SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 28 2.1
SB_14878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059) 27 3.6
SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_31426| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_50503| Best HMM Match : DUF1661 (HMM E-Value=5.8) 27 6.3
SB_48309| Best HMM Match : DUF613 (HMM E-Value=9.5) 27 6.3
SB_45776| Best HMM Match : DUF613 (HMM E-Value=9.5) 27 6.3
SB_28468| Best HMM Match : SBP_bac_5 (HMM E-Value=3.2) 27 6.3
SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43) 27 6.3
SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_17642| Best HMM Match : DUF1128 (HMM E-Value=0.92) 27 6.3
SB_8831| Best HMM Match : Polyoma_agno (HMM E-Value=2.8) 27 6.3
SB_14380| Best HMM Match : DUF1661 (HMM E-Value=5.8) 27 6.3
SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09) 26 8.3
SB_49723| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
>SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 153 bits (371), Expect = 4e-38
Identities = 73/108 (67%), Positives = 88/108 (81%), Gaps = 2/108 (1%)
Frame = +3
Query: 39 RYYSS--LPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETP 212
R YSS P+H KV LPALSPTME+G++VSWEK+EGD+L+EGDLL +IETDKATM FETP
Sbjct: 59 RLYSSDGYPTHTKVPLPALSPTMEAGTLVSWEKQEGDELAEGDLLAQIETDKATMEFETP 118
Query: 213 EEGYLAKILIPAGTKGVPVGKLLCIIVGDQNDVAAFKDFKDDSXPATP 356
EEG++AKILIPAG+K VP+GKLLCIIV ++ DV FK+F D P
Sbjct: 119 EEGFIAKILIPAGSKDVPIGKLLCIIVPNKEDVDKFKNFTVDDAEGIP 166
>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 382
Score = 78.6 bits (185), Expect = 1e-15
Identities = 35/52 (67%), Positives = 42/52 (80%)
Frame = +3
Query: 99 MESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGT 254
ME+G+IVSW KKEGD + GD LCEIETDKAT+ +T E+G LAKI+IP GT
Sbjct: 1 METGTIVSWLKKEGDTIEPGDALCEIETDKATLTLDTDEQGVLAKIVIPPGT 52
>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 44.0 bits (99), Expect = 4e-05
Identities = 19/65 (29%), Positives = 37/65 (56%)
Frame = +3
Query: 63 HIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILI 242
++ VN P + ++ G I W++ GD ++E +++ EIETDK ++ P G + ++ +
Sbjct: 47 YVVVNTPPFAESVTEGDI-RWDQAVGDAVAEDEVVGEIETDKTSIPVTAPANGVIEELFV 105
Query: 243 PAGTK 257
G K
Sbjct: 106 ADGDK 110
>SB_54467| Best HMM Match : GLTT (HMM E-Value=0.52)
Length = 353
Score = 31.9 bits (69), Expect = 0.17
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 17 TTMDCSDEVLFESTITYKGQPSSSFANHG-EW 109
TTMDC D L ST+ Y G P S A+HG +W
Sbjct: 214 TTMDCHDFPL--STMAYHGLPYYSMASHGSQW 243
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 20 TMDCSDEVLFESTITYKGQPSSSFANHG 103
TMDC D L +T+ Y G P S A+HG
Sbjct: 321 TMDCHDLPL--TTMAYHGLPHYSMASHG 346
>SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.1 bits (62), Expect = 1.2
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 114 IVSWEKKEG-DKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGTKGVPVGKLLCII 290
++++++++G + E D E E FET E + +PA GV +G+ I
Sbjct: 24 VINFKRRQGLREYEEEDDEEETEQTSVATVFETSLE-----LKVPASVSGVIIGRGGANI 78
Query: 291 VGDQNDVAAFKDFKDDSXP 347
Q + + +FKDD P
Sbjct: 79 KKIQKETGTYINFKDDDEP 97
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 28.3 bits (60), Expect = 2.1
Identities = 24/106 (22%), Positives = 44/106 (41%)
Frame = +3
Query: 21 QWTVQMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMG 200
+W +M L S I V+ +S S +VS + S+ E + +K +
Sbjct: 1162 RWVTRMLVSRMLVSPISVSRMLVSRLSVSRMLVSLKNINDRNTSQSSKWLERKDEKG-LR 1220
Query: 201 FETPEEGYLAKILIPAGTKGVPVGKLLCIIVGDQNDVAAFKDFKDD 338
T + L +L+ ++ + G ++ G+ NDVA K+D
Sbjct: 1221 LLTLKCLLLVHLLLKTNSREIKPGLRFLVVCGEANDVADLTRQKED 1266
>SB_14878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 241 FRPVQRECLSGNYCALLLEIRMMXRLSKISKMTHXLQHLKNR 366
F PV C SG C LL E M + I +QH + R
Sbjct: 143 FHPVIASCFSGPLCELLPEAACMDQEMLIQASGSSIQHQRYR 184
>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
Length = 765
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 75 NLPALSPTMESGSIVSWEKK 134
N P+LSPT ES + +W +K
Sbjct: 558 NTPSLSPTSESAMLQNWRQK 577
>SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 105 SGSIVSWEKKEGDKLSEGDLLCEIETDK 188
+G ++ K GD ++EGD++ +IE K
Sbjct: 526 TGKVIKVNYKAGDNVAEGDIMVQIEPVK 553
>SB_31426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 123 WEKKEGDKLSEGDLLCEIETDKATMGFETPEE 218
W KEGD SE C IE D E P E
Sbjct: 32 WYGKEGDVASEEHEECLIEDDAIIYNHENPHE 63
>SB_50503| Best HMM Match : DUF1661 (HMM E-Value=5.8)
Length = 533
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/66 (19%), Positives = 28/66 (42%)
Frame = +1
Query: 82 QLFRQPWRVVQL*AGKKRKGTNLVKAIFCARLKLTKQLWALRHLKKVTWPKY*FRPVQRE 261
+++R W+ +Q+ + ++G ++ L +TKQ + L + P + E
Sbjct: 227 KIYRDNWKAIQVYLDESKEGEDITFDQLLVNLNITKQNYLLAVSSSINTPTVFLKRNPNE 286
Query: 262 CLSGNY 279
NY
Sbjct: 287 LRINNY 292
>SB_48309| Best HMM Match : DUF613 (HMM E-Value=9.5)
Length = 146
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/66 (19%), Positives = 28/66 (42%)
Frame = +1
Query: 82 QLFRQPWRVVQL*AGKKRKGTNLVKAIFCARLKLTKQLWALRHLKKVTWPKY*FRPVQRE 261
+++R W+ +Q+ + ++G ++ L +TKQ + L + P + E
Sbjct: 16 KIYRDNWKAIQVYLDESKEGEDITFDQLLVNLNITKQNYLLAVSSSINTPTVFLKRNPNE 75
Query: 262 CLSGNY 279
NY
Sbjct: 76 LRINNY 81
>SB_45776| Best HMM Match : DUF613 (HMM E-Value=9.5)
Length = 240
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/66 (19%), Positives = 28/66 (42%)
Frame = +1
Query: 82 QLFRQPWRVVQL*AGKKRKGTNLVKAIFCARLKLTKQLWALRHLKKVTWPKY*FRPVQRE 261
+++R W+ +Q+ + ++G ++ L +TKQ + L + P + E
Sbjct: 110 KIYRDNWKAIQVYLDESKEGEDITFDQLLVNLNITKQNYLLAVSSSINTPTVFLKRNPNE 169
Query: 262 CLSGNY 279
NY
Sbjct: 170 LRINNY 175
>SB_28468| Best HMM Match : SBP_bac_5 (HMM E-Value=3.2)
Length = 447
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/66 (19%), Positives = 28/66 (42%)
Frame = +1
Query: 82 QLFRQPWRVVQL*AGKKRKGTNLVKAIFCARLKLTKQLWALRHLKKVTWPKY*FRPVQRE 261
+++R W+ +Q+ + ++G ++ L +TKQ + L + P + E
Sbjct: 330 KIYRDNWKAIQVYLDESKEGEDITFDQLLVNLNITKQNYLLAVSSSINTPTVFLKRNPNE 389
Query: 262 CLSGNY 279
NY
Sbjct: 390 LRINNY 395
>SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43)
Length = 1029
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/66 (19%), Positives = 28/66 (42%)
Frame = +1
Query: 82 QLFRQPWRVVQL*AGKKRKGTNLVKAIFCARLKLTKQLWALRHLKKVTWPKY*FRPVQRE 261
+++R W+ +Q+ + ++G ++ L +TKQ + L + P + E
Sbjct: 110 KIYRDNWKAIQVYLDESKEGEDITFDQLLVNLNITKQNYLLAVSSSINTPTVFLKRNPNE 169
Query: 262 CLSGNY 279
NY
Sbjct: 170 LRINNY 175
>SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1867
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/66 (19%), Positives = 28/66 (42%)
Frame = +1
Query: 82 QLFRQPWRVVQL*AGKKRKGTNLVKAIFCARLKLTKQLWALRHLKKVTWPKY*FRPVQRE 261
+++R W+ +Q+ + ++G ++ L +TKQ + L + P + E
Sbjct: 877 KIYRDNWKAIQVYLDESKEGEDITFDQLLVNLNITKQNYLLAVSSSINTPTVFLKRNPNE 936
Query: 262 CLSGNY 279
NY
Sbjct: 937 LRINNY 942
>SB_17642| Best HMM Match : DUF1128 (HMM E-Value=0.92)
Length = 1100
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/66 (19%), Positives = 28/66 (42%)
Frame = +1
Query: 82 QLFRQPWRVVQL*AGKKRKGTNLVKAIFCARLKLTKQLWALRHLKKVTWPKY*FRPVQRE 261
+++R W+ +Q+ + ++G ++ L +TKQ + L + P + E
Sbjct: 517 KIYRDNWKAIQVYLDESKEGEDITFDQLLVNLNITKQNYLLAVSSSINTPTVFLKRNPNE 576
Query: 262 CLSGNY 279
NY
Sbjct: 577 LRINNY 582
>SB_8831| Best HMM Match : Polyoma_agno (HMM E-Value=2.8)
Length = 529
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/66 (19%), Positives = 28/66 (42%)
Frame = +1
Query: 82 QLFRQPWRVVQL*AGKKRKGTNLVKAIFCARLKLTKQLWALRHLKKVTWPKY*FRPVQRE 261
+++R W+ +Q+ + ++G ++ L +TKQ + L + P + E
Sbjct: 399 KIYRDNWKAIQVYLDESKEGEDITFDQLLVNLNITKQNYLLAVSSSINTPTVFLKRNPNE 458
Query: 262 CLSGNY 279
NY
Sbjct: 459 LRINNY 464
>SB_14380| Best HMM Match : DUF1661 (HMM E-Value=5.8)
Length = 384
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/66 (19%), Positives = 28/66 (42%)
Frame = +1
Query: 82 QLFRQPWRVVQL*AGKKRKGTNLVKAIFCARLKLTKQLWALRHLKKVTWPKY*FRPVQRE 261
+++R W+ +Q+ + ++G ++ L +TKQ + L + P + E
Sbjct: 16 KIYRDNWKAIQVYLDESKEGEDITFDQLLVNLNITKQNYLLAVSSSINTPTVFLKRNPNE 75
Query: 262 CLSGNY 279
NY
Sbjct: 76 LRINNY 81
>SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)
Length = 416
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 126 EKKEGDKLSEGDLLCEIETDKATMGFETPEE 218
E+ EG++L+EGD + D T G +T +
Sbjct: 96 EENEGERLTEGDDYTFVMFDTETTGLDTSND 126
>SB_49723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 126 EKKEGDKLSEGDLLCEIETDKATMGFETPEE 218
E+ EG++L+EGD + D T G +T +
Sbjct: 4 EENEGERLTEGDDYTFVMFDTETTGLDTSND 34
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 26.2 bits (55), Expect = 8.3
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 196 WALRHLKKVTWPKY*FRPVQRECLSGNYCALLLEIRMMXRLSKISKMTHXLQHLKN 363
W L+ + P P Q+E LSG A + + ++ ++ KM L+ L+N
Sbjct: 630 WTLKRKARDDVPLVPPTPQQQEKLSGKQGAADISKNLQVQIERLMKMRCDLERLRN 685
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,312,181
Number of Sequences: 59808
Number of extensions: 215244
Number of successful extensions: 582
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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