Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30205
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   1.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   6.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.1  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 42  YYSSLPSHIKVNLPALSPTMES 107
           + + LP H+  N+P +  T+ S
Sbjct: 6   HVAQLPHHLSPNMPTMDSTVSS 27


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 137 FLFFPAYN*TTLHGWRKSWKVDLY 66
           F F P Y    ++G+   WK  L+
Sbjct: 217 FYFDPRYGNYNINGFNFQWKDGLF 240


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 84  ALSPTMESGSIVSWEKKEGDKLSEGDLL 167
           A S   E GSI++  +     LS G+LL
Sbjct: 891 ATSVKAEPGSIMAMSESSKKVLSPGELL 918


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,986
Number of Sequences: 438
Number of extensions: 2086
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)