Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30204
(707 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 276 4e-73
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 274 2e-72
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 266 5e-70
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 263 3e-69
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 259 4e-68
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 256 5e-67
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 248 1e-64
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 240 2e-62
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 239 4e-62
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 233 2e-60
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 228 1e-58
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 227 2e-58
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 223 3e-57
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 221 2e-56
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 220 3e-56
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 216 5e-55
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 215 7e-55
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 210 3e-53
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 202 5e-51
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 200 3e-50
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 200 3e-50
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 198 1e-49
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 194 2e-48
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 190 3e-47
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 186 4e-46
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 183 3e-45
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 182 8e-45
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 175 1e-42
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 174 2e-42
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 167 2e-40
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 167 2e-40
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 167 3e-40
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 165 1e-39
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 165 1e-39
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 147 2e-34
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 143 3e-33
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 140 2e-32
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 140 2e-32
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 137 3e-31
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 129 8e-29
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 126 7e-28
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 125 1e-27
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 123 5e-27
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 123 5e-27
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 122 1e-26
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 120 3e-26
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 120 4e-26
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 119 8e-26
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 118 2e-25
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 117 2e-25
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 116 6e-25
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 116 6e-25
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 115 1e-24
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 111 1e-23
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 109 5e-23
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 108 2e-22
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 107 3e-22
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 105 1e-21
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 105 1e-21
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 104 2e-21
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 103 4e-21
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 103 4e-21
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 103 6e-21
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 102 8e-21
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 100 4e-20
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 100 7e-20
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 98 2e-19
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 98 2e-19
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 96 9e-19
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 95 2e-18
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 95 2e-18
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 95 2e-18
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 94 3e-18
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 92 1e-17
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 91 2e-17
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 90 6e-17
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 86 9e-16
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 85 1e-15
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 85 1e-15
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 85 1e-15
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 85 1e-15
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 85 1e-15
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 84 3e-15
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 84 4e-15
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 83 7e-15
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 82 1e-14
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 82 2e-14
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 81 3e-14
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 79 1e-13
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 78 2e-13
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 76 7e-13
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 75 1e-12
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 71 3e-11
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 65 2e-09
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 62 1e-08
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 58 2e-07
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 52 1e-05
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 51 3e-05
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 50 6e-05
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 2e-04
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 44 0.004
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 41 0.034
UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=... 40 0.045
UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia polym... 36 1.3
UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|R... 36 1.3
UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3 pre... 36 1.3
UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Ha... 34 3.0
UniRef50_Q6EGM1 Cluster: Cytochrome c oxidase subunit I; n=1; Br... 34 3.0
UniRef50_A5H2T8 Cluster: Cytochrome c oxidase subunit 1; n=1; Pi... 34 3.0
UniRef50_Q0BZ17 Cluster: Amidohydrolase family/endoribonuclease ... 34 3.9
UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C... 34 3.9
UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 33 5.2
UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=... 33 5.2
UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7; Locu... 33 6.9
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ... 33 9.1
UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3; ... 33 9.1
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 276 bits (676), Expect = 4e-73
Identities = 142/222 (63%), Positives = 153/222 (68%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 184
FGI +G++GTSL LLIRAELG PGSLIGDDQIYNTIVTAHA N
Sbjct: 19 FGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNW 78
Query: 185 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGR 364
LVPL+LGAPD+AFPR+NN+ F VENGAGTGWTVYPPLSSNIAH G
Sbjct: 79 LVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHGGS 138
Query: 365 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 544
SVDLAIFSLHLAGISS SFDQ+PLFV AVGITAF
Sbjct: 139 SVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLSLPV 198
Query: 545 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 670
AGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 199 LAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 274 bits (671), Expect = 2e-72
Identities = 140/220 (63%), Positives = 150/220 (68%)
Frame = +2
Query: 23 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 202
++GTSL LLIR ELG PGSLIGDDQIYNTIVTAHA N L+PL+L
Sbjct: 1 MVGTSLSLLIRTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLML 60
Query: 203 GAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAI 382
GAPD+AFPR+NN+ F VENGAGTGWTVYPPLSSNIAH G SVDLAI
Sbjct: 61 GAPDMAFPRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAI 120
Query: 383 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 562
FSLHLAGISS SFDQ+PLF+ AVGITA AGAIT
Sbjct: 121 FSLHLAGISSILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAIT 180
Query: 563 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 682
+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 181 MLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI 220
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 266 bits (651), Expect = 5e-70
Identities = 139/234 (59%), Positives = 155/234 (66%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 184
FG +G+IGT+L LLIRAELG PG+L+GDDQIYN IVTAHA N
Sbjct: 23 FGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNW 82
Query: 185 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGR 364
LVPL++GAPD+AFPR+NN+ F VE GAGTGWTVYPPL+ N+AH G
Sbjct: 83 LVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGA 142
Query: 365 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 544
SVDLAIFSLHLAGISS S Q PLFV +V ITA
Sbjct: 143 SVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLITAVLLLLSLPV 202
Query: 545 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+IS
Sbjct: 203 LAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMIS 256
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 263 bits (644), Expect = 3e-69
Identities = 135/234 (57%), Positives = 152/234 (64%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 184
FG +G++GT+L LLIRAEL PG+L+GDDQIYN IVTAHA N
Sbjct: 22 FGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNW 81
Query: 185 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGR 364
LVPL++GAPD+AFPR+NN+ F VE GAGTGWTVYPPL+ N+AH G
Sbjct: 82 LVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGA 141
Query: 365 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 544
SVDL IFSLHLAG+SS S Q PLFV AV +TA
Sbjct: 142 SVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLLSLPV 201
Query: 545 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIIS
Sbjct: 202 LAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIIS 255
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 259 bits (635), Expect = 4e-68
Identities = 132/234 (56%), Positives = 152/234 (64%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 184
FG +G++GT+L LLIRAEL PG+L+GDDQIYN IVTAHA N
Sbjct: 22 FGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNW 81
Query: 185 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGR 364
LVPL++GAPD+AFPR+NN+ F VE GAGTGWTVYPPL+ N+AH G
Sbjct: 82 LVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGA 141
Query: 365 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 544
SVDL IFSLHLAG+SS + Q PLFV +V +TA
Sbjct: 142 SVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLLSLPV 201
Query: 545 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+IS
Sbjct: 202 LAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMIS 255
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 256 bits (626), Expect = 5e-67
Identities = 131/234 (55%), Positives = 151/234 (64%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 184
FG +G++GT+L LLIRAELG PG+L+G+D IYN IVTAHA N
Sbjct: 22 FGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNW 81
Query: 185 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGR 364
LVPL++GAPD+AFPR+NN+ F VE GAGTGWTVYPPL+ N +H G
Sbjct: 82 LVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGA 141
Query: 365 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 544
SVDL IFSLHLAG+SS + Q PLFV +V ITA
Sbjct: 142 SVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPV 201
Query: 545 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+IS
Sbjct: 202 LAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMIS 255
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 248 bits (606), Expect = 1e-64
Identities = 126/234 (53%), Positives = 150/234 (64%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 184
FG+ SG++G S+ L+IR ELG PGSLIG+DQIYN+IVT+HA N
Sbjct: 6 FGMWSGMLGFSMSLIIRLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNW 65
Query: 185 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGR 364
L+PL+LG+PD++FPR+NN+ F + G GTGWTVYPPLS + H G
Sbjct: 66 LIPLMLGSPDMSFPRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGM 125
Query: 365 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 544
SVDL IFSLHLAG SS + D++ LF +V ITA
Sbjct: 126 SVDLGIFSLHLAGASSIMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPV 185
Query: 545 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
AGAIT+LLTDRN+NTSFFDP+GGGDPILYQHLF FFGHPEVYILILPGFGIIS
Sbjct: 186 LAGAITMLLTDRNMNTSFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGIIS 239
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 240 bits (588), Expect = 2e-62
Identities = 123/236 (52%), Positives = 147/236 (62%), Gaps = 2/236 (0%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 178
FG +G++GT +LIR EL PG I G+ Q+YN ++TAHA
Sbjct: 23 FGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFG 82
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHR 358
N VP+++GAPD+AFPR+NNI F VE G+GTGWTVYPPLS +H
Sbjct: 83 NWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHS 142
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
G +VDLAIFSLHL+G+SS + +LPLFV +V +TAF
Sbjct: 143 GGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSL 202
Query: 539 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
AGAIT+LLTDRN NT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIIS
Sbjct: 203 PVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIIS 258
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 239 bits (586), Expect = 4e-62
Identities = 124/236 (52%), Positives = 147/236 (62%), Gaps = 2/236 (0%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 178
F + + +IGT+ +LIR EL PG L GD Q+YN I+TAHA
Sbjct: 20 FAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFG 79
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHR 358
N LVP+++GAPD+AFPR+NNI F VE GAGTGWTVYPPLS +H
Sbjct: 80 NYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHS 139
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
G SVDLAIFSLHL+GISS + +LPLFV A+ +TA
Sbjct: 140 GGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSL 199
Query: 539 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF FFGHPEVYILI+PGFG++S
Sbjct: 200 PVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGMVS 255
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 233 bits (571), Expect = 2e-60
Identities = 120/236 (50%), Positives = 147/236 (62%), Gaps = 2/236 (0%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 178
FG SG++G + +LIR EL P + L+G+ QIYN ++TAHA
Sbjct: 28 FGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFG 87
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHR 358
N LVP+++G+PD+AFPR+NNI F VE G GTGWTVYPPLSS +H
Sbjct: 88 NWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHS 147
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
G +VDLAIFSLH++G SS S ++PLFV ++ +TAF
Sbjct: 148 GGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAFLLLLAV 207
Query: 539 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
AGAIT+LLTDRN NTSFFD +GGGDPILYQHLF FFGHPEVYILILPGFG+IS
Sbjct: 208 PVLAGAITMLLTDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVYILILPGFGMIS 263
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 228 bits (557), Expect = 1e-58
Identities = 124/214 (57%), Positives = 142/214 (66%)
Frame = -3
Query: 645 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 466
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59
Query: 465 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 286
+R I+E PAKC+EKI STD P CAI SGG TVHPVP P STI
Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119
Query: 285 LEIINIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKAWAVTIV 106
L ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KAWAVT+
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMT 179
Query: 105 L*I*SSPINDPGFPNSARIKSLKDVPIIPDQIPK 4
L I S PI PG PNSARIKSL DVP +P PK
Sbjct: 180 L-IWSFPIKLPGCPNSARIKSLSDVPTMPAHAPK 212
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 227 bits (555), Expect = 2e-58
Identities = 118/213 (55%), Positives = 133/213 (62%)
Frame = +2
Query: 8 GI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 187
GI SG+IGT+L LLIR ELG PGS IG+DQ+YN +VTAHA N L
Sbjct: 6 GIWSGLIGTALSLLIRVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWL 65
Query: 188 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRS 367
VPL+LGAPD+AFPR+NN+ F VE+GAGTGWTVYPPLS N AH G S
Sbjct: 66 VPLMLGAPDMAFPRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPS 125
Query: 368 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 547
VDLAIFSLHLAG+SS + + LFV +V ITA
Sbjct: 126 VDLAIFSLHLAGVSSILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVL 185
Query: 548 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 646
AGAIT+LLTDRN NTSFFDPAGGGDPILYQHLF
Sbjct: 186 AGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 218
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 223 bits (546), Expect = 3e-57
Identities = 117/235 (49%), Positives = 140/235 (59%), Gaps = 1/235 (0%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 181
+ + +G+IGT+ +LIR EL PG I D+Q+YN+I+TAHA N
Sbjct: 22 YALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGN 81
Query: 182 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRG 361
L+PL LG PD+ FPR+NNI + +ENG GTGWT+YPPLS +H G
Sbjct: 82 FLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSG 141
Query: 362 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 541
SVDLAIF LHL+GISS +L LF AV ITA
Sbjct: 142 PSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLLLSLP 201
Query: 542 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
AG IT++LTDRN NTSFF+ AGGGDPILYQHLF FFGHPEVYILI+PGFGIIS
Sbjct: 202 VLAGGITMVLTDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILIIPGFGIIS 256
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 221 bits (539), Expect = 2e-56
Identities = 117/232 (50%), Positives = 140/232 (60%), Gaps = 2/232 (0%)
Frame = +2
Query: 17 SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 190
SG+ GT++ L+IR EL PGS L G+ Q++N +V HA N L+
Sbjct: 25 SGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLL 84
Query: 191 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSV 370
PL++GA D AFPRINNI F VE+GAGTGWTVYPPLSS AH G SV
Sbjct: 85 PLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSV 144
Query: 371 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 550
DLAIF+LHL ISS + +LPLFV ++ ITAF +
Sbjct: 145 DLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLS 204
Query: 551 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
IT+LL DRN NTSFF+ +GGGDPILY+HLF FFGHPEVYILI+PGFGIIS
Sbjct: 205 AGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPGFGIIS 256
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 220 bits (537), Expect = 3e-56
Identities = 114/218 (52%), Positives = 133/218 (61%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 184
FG SG IGT+ +LIR EL +PGS++GDD +YN IVTAHA N
Sbjct: 23 FGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNW 82
Query: 185 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGR 364
VPL++GAPD+AFPR+NNI F VE GAGTGWTVYPPL+S AH G
Sbjct: 83 FVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGG 142
Query: 365 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 544
SVD+AIFSLHLAG+SS + ++PLFV +V ITA
Sbjct: 143 SVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLLLSLPV 202
Query: 545 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 658
AGAIT+LLTDR NT+FFDPAGGGDPILYQHLF FFG
Sbjct: 203 LAGAITMLLTDRYFNTTFFDPAGGGDPILYQHLFWFFG 240
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 216 bits (527), Expect = 5e-55
Identities = 113/232 (48%), Positives = 139/232 (59%), Gaps = 2/232 (0%)
Frame = +2
Query: 17 SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 190
SG+ G+++ ++IR EL PGS L G+ Q++N +V HA N ++
Sbjct: 25 SGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYML 84
Query: 191 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSV 370
PL++GA D++FPRIN+I F VE+GAGTGWTVYPPLSS AH G SV
Sbjct: 85 PLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSV 144
Query: 371 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 550
DLAIFSLHL ISS S ++PLFV A+ ITAF +
Sbjct: 145 DLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLLSLPVLS 204
Query: 551 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
IT+LL DRN NTSFF+ AGGGDPI YQH F FFGHPEVYILI+PGFGI+S
Sbjct: 205 AGITMLLMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVYILIIPGFGIVS 256
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 215 bits (526), Expect = 7e-55
Identities = 111/235 (47%), Positives = 138/235 (58%), Gaps = 1/235 (0%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 181
F + SG++GT+ +LIR EL PG I D+Q+YN+I+T+H N
Sbjct: 48 FALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGN 107
Query: 182 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRG 361
L+P+++G PD+AFPR+NN+ + +ENG GTGWT+YPPLS +H
Sbjct: 108 FLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSS 167
Query: 362 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 541
VDL IF LHL+GISS +L LF AV ITA
Sbjct: 168 MGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWAVVITAVLLLLSLP 227
Query: 542 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A AIT+LLTDRNLNTSF++ AGGGD ILYQHLF FFGHPEVYILI+PGFGIIS
Sbjct: 228 VLAAAITMLLTDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYILIIPGFGIIS 282
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 210 bits (513), Expect = 3e-53
Identities = 109/237 (45%), Positives = 130/237 (54%), Gaps = 2/237 (0%)
Frame = +2
Query: 2 FFGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXX 175
FFG+ +G + L +L+R EL PG L G+ YN I T H
Sbjct: 23 FFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILFGGF 82
Query: 176 XN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAH 355
N VP+++GAPD++FPR+NN F E G GTGWTVYPPLSS +H
Sbjct: 83 GNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSH 142
Query: 356 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 535
G SVDL IFS HL GI S LPLFV +V +T+F
Sbjct: 143 SGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSFLVIVA 202
Query: 536 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A AIT+LL DRN NTSF+DP GGGD +LYQHLF FFGHPEVYILILPGFG++S
Sbjct: 203 IPVLAAAITLLLFDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVYILILPGFGLVS 259
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 202 bits (494), Expect = 5e-51
Identities = 108/216 (50%), Positives = 128/216 (59%), Gaps = 2/216 (0%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 178
F + + +IGT+ +LIR EL PG L GD Q+YN I+TAHA
Sbjct: 20 FAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFG 79
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHR 358
N LVP+++GAPD+AFPR+NNI F VE GAGTGWTVYPPLS +H
Sbjct: 80 NYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHS 139
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
G SVDLAIFSLHL+GISS + +LPLFV A+ +TA
Sbjct: 140 GGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSL 199
Query: 539 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 646
AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF
Sbjct: 200 PVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLF 235
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 200 bits (488), Expect = 3e-50
Identities = 102/236 (43%), Positives = 139/236 (58%), Gaps = 2/236 (0%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 178
F + SG++G SL +L+R EL NP L+ + Q++N ++TAHA
Sbjct: 38 FSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALA 97
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHR 358
N LVPL +G+ D AFPRINN+ F ++ G G+GWT+YPPL+S +H
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHS 157
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
G S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 158 GSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
Query: 539 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A +T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P FG++S
Sbjct: 218 PVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVVS 273
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 200 bits (488), Expect = 3e-50
Identities = 102/236 (43%), Positives = 139/236 (58%), Gaps = 2/236 (0%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 178
F + SG++G SL +L+R EL NP L+ + Q++N ++TAHA
Sbjct: 38 FSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALA 97
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHR 358
N LVPL +G+ D AFPRINN+ F ++ G G+GWT+YPPL+S +H
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHS 157
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
G S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 158 GSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
Query: 539 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A +T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P FG++S
Sbjct: 218 PVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVVS 273
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 198 bits (482), Expect = 1e-49
Identities = 109/239 (45%), Positives = 137/239 (57%), Gaps = 5/239 (2%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 181
F + SG++GT+ +LIR EL PG I ++Q+YN+I+TAHA N
Sbjct: 50 FALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGN 109
Query: 182 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTV----YPPLSSNI 349
L+PL++G PD+AFPR+NNI F +E G GTGWT+ YPPLS
Sbjct: 110 FLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQ 169
Query: 350 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 529
+H G SVDLAIF+LHL+G+SS +L LF A +
Sbjct: 170 SHSGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLALFGWATWSSRSRYF 229
Query: 530 XXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
IT++LTDRN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI+PGFGIIS
Sbjct: 230 L-------GITMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILIIPGFGIIS 281
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 194 bits (473), Expect = 2e-48
Identities = 103/201 (51%), Positives = 120/201 (59%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 184
FG +G++GT+L LLIRAEL PG+L+GDDQIYN IVTAHA N
Sbjct: 11 FGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNW 70
Query: 185 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGR 364
L+PL++GAPD+AFPR+NN+ F +E GAGTGWTVYPPL+ N+AH G
Sbjct: 71 LIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGA 130
Query: 365 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 544
SVDL IFSLHLAGISS S Q PLFV AV ITA
Sbjct: 131 SVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLITAVLLLLSLPV 190
Query: 545 XAGAITILLTDRNLNTSFFDP 607
A IT+LLTDRNLNT+FFDP
Sbjct: 191 LAAGITMLLTDRNLNTTFFDP 211
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 190 bits (463), Expect = 3e-47
Identities = 104/225 (46%), Positives = 128/225 (56%), Gaps = 2/225 (0%)
Frame = +2
Query: 17 SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 190
SG+ GT++ L+IR EL PGS L G+ Q++N +V HA N L+
Sbjct: 25 SGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLL 84
Query: 191 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSV 370
PL++GA D AFPRINNI F VE+GAGTGWTVYPPLSS AH G SV
Sbjct: 85 PLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSV 144
Query: 371 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 550
DLAIF+LHL ISS + +LPLFV ++ ITAF +
Sbjct: 145 DLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLS 204
Query: 551 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 685
IT+LL DRN NTSFF+ +GGGDPILY+HLF FFG I++L
Sbjct: 205 AGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIML 249
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 186 bits (454), Expect = 4e-46
Identities = 113/254 (44%), Positives = 139/254 (54%), Gaps = 20/254 (7%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPG-------SLIGD------DQIY---NTIVTAHAXXX 136
F I +GIIG ++ L+RAEL PG + D DQ Y N ++TAH
Sbjct: 46 FAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYHLWNVLITAHGLIM 105
Query: 137 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVE----NG 304
N VP+++GAPD+AFPR+NNI F V NG
Sbjct: 106 VFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALLLGSTFVPGGTGNG 165
Query: 305 AGTGWTVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL 484
AGTGWTVY PLS++ G +VD+AI SLH+AG SS + ++
Sbjct: 166 AGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTILNMRAPGMTLHKM 224
Query: 485 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 664
PLFV +V +TAF A AIT+LLTDRN T+F+D AGGGDP LYQHLF FFGHP
Sbjct: 225 PLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDPELYQHLFWFFGHP 284
Query: 665 EVYILILPGFGIIS 706
EVYI+ILPGFGIIS
Sbjct: 285 EVYIMILPGFGIIS 298
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 183 bits (446), Expect = 3e-45
Identities = 91/220 (41%), Positives = 124/220 (56%), Gaps = 2/220 (0%)
Frame = +2
Query: 53 RAELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 226
+A LG L G D ++N ++T H N +PL++GAPD+AFP
Sbjct: 142 QALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFP 201
Query: 227 RINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAIFSLHLAGI 406
R+NN+ + ++ GAG GWT YPP+S+ R+VD AIF++H++G
Sbjct: 202 RLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGA 261
Query: 407 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 586
SS + ++PLF +V +TA+ AGAIT+LLTDRN
Sbjct: 262 SSILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNF 321
Query: 587 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
T+FFDPAGGGDPIL+QH+F FFGHPEVYI+ILP FG+IS
Sbjct: 322 GTTFFDPAGGGDPILFQHIFWFFGHPEVYIVILPAFGVIS 361
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 182 bits (443), Expect = 8e-45
Identities = 98/216 (45%), Positives = 123/216 (56%), Gaps = 2/216 (0%)
Frame = +2
Query: 17 SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 190
SG+ GT++ L+IR EL PG L G++Q++N +V HA N ++
Sbjct: 25 SGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNYML 84
Query: 191 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSV 370
PL++GA D AFPRINNI F VE+GAGTGWTVYPPL+S AH G SV
Sbjct: 85 PLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGPSV 144
Query: 371 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 550
DLAIF+LH+ ISS + +LPLFV A+ ITA +
Sbjct: 145 DLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLLTLPVLS 204
Query: 551 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 658
+T+LL DRN NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 205 AGVTMLLLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 175 bits (425), Expect = 1e-42
Identities = 98/229 (42%), Positives = 124/229 (54%), Gaps = 2/229 (0%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 178
F + S +IGT L +IR EL N GS L G+ Q +N ++TAHA
Sbjct: 26 FALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFG 85
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHR 358
N L+PL+LGA D+AF R+NNI F VE GAGTGWTVY PL+ +H
Sbjct: 86 NYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHS 145
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
G +VDLAIFSLHL+G SS ++ +PLF AV TA
Sbjct: 146 GPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLLSL 205
Query: 539 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 685
A +T+ + DRN NTSFF+ AGGGD +LYQHLF ++ HPEV I+ L
Sbjct: 206 PVLAAGLTMGIFDRNFNTSFFEYAGGGDAVLYQHLFYWWNHPEVKIICL 254
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 174 bits (423), Expect = 2e-42
Identities = 93/231 (40%), Positives = 130/231 (56%), Gaps = 4/231 (1%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 178
F + SG++G SL +L+R EL NP L+ + Q++N ++TAHA
Sbjct: 38 FSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALA 97
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHR 358
N LVPL +G+ D AFPRINN+ F ++ G G+GWT+YPPL+S +H
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHS 157
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
G S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 158 GSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
Query: 539 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH--PEVYILIL 685
A +T+LL DRN NTSFF +GGGDP+LY+H+F FFG P + I+I+
Sbjct: 218 PVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGQIWPIIIIIII 268
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 167 bits (407), Expect = 2e-40
Identities = 90/235 (38%), Positives = 121/235 (51%), Gaps = 2/235 (0%)
Frame = +2
Query: 8 GI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 181
G +G+ G+ L +LIR EL +PG G Q+YN+++T H N
Sbjct: 32 GYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFGN 91
Query: 182 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRG 361
++PL+LGAP++AFPR+N + F + G G+ WT YPPLS
Sbjct: 92 WMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQPE 150
Query: 362 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 541
S+D I LH GI S + DQ+ +FV +T+F
Sbjct: 151 LSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSVP 210
Query: 542 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
AG++ LL DRN NTSF+D GG+P+LYQHLF FFGHPEVY++ILP FGIIS
Sbjct: 211 VLAGSLLFLLLDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILPVFGIIS 265
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 167 bits (406), Expect = 2e-40
Identities = 90/232 (38%), Positives = 115/232 (49%), Gaps = 2/232 (0%)
Frame = +2
Query: 17 SGIIGTSLRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 190
SG +G L IR EL G L GD Q YN ++T+H N +
Sbjct: 27 SGFVGYVYSLFIRLELSLIGCGILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFI 86
Query: 191 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSV 370
P++ G PD+ FPR+NN+ F E G G GWT+YP L H +
Sbjct: 87 PVMAGFPDMVFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLAC 146
Query: 371 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 550
D +F++HL GISS SF LF+ A ITA A
Sbjct: 147 DFVMFAVHLLGISSILNSINLLGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLA 206
Query: 551 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
G +T++L DRN NTSF+D GGGD IL+QH+F FFGHPEVYI++LP FG+IS
Sbjct: 207 GGVTLILCDRNFNTSFYDVVGGGDLILFQHIFWFFGHPEVYIILLPVFGLIS 258
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 167 bits (405), Expect = 3e-40
Identities = 94/234 (40%), Positives = 130/234 (55%), Gaps = 2/234 (0%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 178
F + SG++G SL +L+R EL NP L+ + Q++N ++TAHA
Sbjct: 38 FSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALA 97
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHR 358
N LVPL +G+ D AFPRINN+ F ++ G G+GWT+YPPL+S +H
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHS 157
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
G S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 158 GSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
Query: 539 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 700
A +T+LL DRN NTSFF +GGGDP+LY+H+ F+ +P V ILI GI
Sbjct: 218 PVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHI--FYKNP-VLILIWLTSGI 268
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 165 bits (400), Expect = 1e-39
Identities = 89/156 (57%), Positives = 98/156 (62%)
Frame = +2
Query: 194 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVD 373
L LGAPD FPR N+ F VE GAGTGWTV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 374 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 553
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 554 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 661
AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 165 bits (400), Expect = 1e-39
Identities = 88/236 (37%), Positives = 123/236 (52%), Gaps = 1/236 (0%)
Frame = +2
Query: 2 FFGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 181
+ G+ SG+ G SL +R EL +PG + +Y++I+T HA N
Sbjct: 23 YMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGN 82
Query: 182 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRG 361
+PL++ D++ PR+NN+ G G GWT+YPPLS++ G
Sbjct: 83 WFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDG 142
Query: 362 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXXXX 538
+DLA+FSLH+AG+SS F L P+ + + T+
Sbjct: 143 LPIDLAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSV 202
Query: 539 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A +T+LL DR+ +TSF+ P GGGDPIL+QHLF FFGHPEVYILILP FG+IS
Sbjct: 203 PVLAAGLTLLLLDRHFSTSFYYPEGGGDPILWQHLFWFFGHPEVYILILPAFGVIS 258
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 147 bits (357), Expect = 2e-34
Identities = 90/234 (38%), Positives = 113/234 (48%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 184
FG+ G IG L LLIR L +P + +YN +VT H N
Sbjct: 120 FGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLMPILIGGFGNY 179
Query: 185 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGR 364
+P+ L D+ PR+N++ G G GWT+YPPLS G
Sbjct: 180 FLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPPLSI-WEGSGF 236
Query: 365 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 544
VD +FSLHLAG+SS S + V A T+
Sbjct: 237 GVDYLMFSLHLAGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAYLFTSVLLLLSLPV 291
Query: 545 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A IT+LL DRN T+FF+P+GGGDPIL+QHLF FFGHPEVY+LILPGFGI+S
Sbjct: 292 LASGITMLLFDRNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLILPGFGIVS 345
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 143 bits (347), Expect = 3e-33
Identities = 82/232 (35%), Positives = 116/232 (50%), Gaps = 3/232 (1%)
Frame = +2
Query: 20 GIIGTSLRLLIRAELGNPG-SLIGDD--QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 190
G+IG + +LIR EL G +I D +IYN + T H N L
Sbjct: 32 GMIGFYMSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLY 91
Query: 191 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSV 370
P++LG D+ +PR+N +E G+GTGWT+YPPLS+++++ G +
Sbjct: 92 PVLLGYCDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTGWTLYPPLSTSLSNVG--I 149
Query: 371 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 550
D IF L AGI+S D++ ++ +T+F
Sbjct: 150 DFIIFGLLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAAWSIVLTSFLLLLSLPVVT 209
Query: 551 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
++ DR+ NT FF+ + GDP+LYQHLF FFGHPEVYI+ILPGFGIIS
Sbjct: 210 AVFLMVFLDRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYIMILPGFGIIS 261
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 140 bits (340), Expect = 2e-32
Identities = 82/239 (34%), Positives = 118/239 (49%), Gaps = 4/239 (1%)
Frame = +2
Query: 2 FFGI*SGIIGTSLRLLIRAELGNPG-SLIGDDQI--YNTIVTAHAXXXXXXXXXXXXXXX 172
+F G G L +++R EL + +I + + YN I T H
Sbjct: 23 WFSFLFGSYGFLLSVILRTELYSSSLRIIAQENVNLYNMIFTIHGIIMIFFNIMPGLFGG 82
Query: 173 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIA 352
N +P++ G+P++A+PRIN+I E G GTGWT+YPPLS+++
Sbjct: 83 FGNYFLPILCGSPELAYPRINSISLLLQPIAFVLVILSTAAEFGGGTGWTLYPPLSTSLM 142
Query: 353 HRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 529
+VD+ IF L ++G++S + L + ++ IT+
Sbjct: 143 SLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHLRAKGLTLGILSVSTWSLIITSGMLL 202
Query: 530 XXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
G + +LL+D + NT FFDP GDPILYQHLF FFGHPEVYILILP FG+IS
Sbjct: 203 LTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILPAFGVIS 261
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 140 bits (340), Expect = 2e-32
Identities = 80/185 (43%), Positives = 98/185 (52%), Gaps = 2/185 (1%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 178
F + + +IGT+ +LIR EL PG L GD Q+YN I+TAHA
Sbjct: 20 FAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFG 79
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHR 358
N LVP+++GAPD+AFPR+NNI F VE GAGTGWTVYPPLS +H
Sbjct: 80 NYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHS 139
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
G SVDLAIFSLHL+GISS + +LPLFV A+ +TA
Sbjct: 140 GGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSL 199
Query: 539 XXXAG 553
AG
Sbjct: 200 PVLAG 204
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 137 bits (331), Expect = 3e-31
Identities = 85/233 (36%), Positives = 111/233 (47%)
Frame = +2
Query: 8 GI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 187
GI S ++G S LL R +L P L D +YN VT H N L
Sbjct: 20 GIFSALLGMSFSLLFRLQLAFPSILTSD--VYNAFVTLHGLVMVFFAAMPTAIGFFANLL 77
Query: 188 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRS 367
+P PD+ FPR+N + F A GWT YPPLSS S
Sbjct: 78 IPYHCNLPDLLFPRMNALSFWLMPFSLSLLLFSM-----ASAGWTFYPPLSS----LSPS 128
Query: 368 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 547
V+ ++FSLHLAGI+S + L LF ++ + +
Sbjct: 129 VEFSVFSLHLAGIASLISSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSLPVL 186
Query: 548 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A IT++LTD++L T F+D GGDP+LYQHLF FFGHPEVY++ILP FG+ S
Sbjct: 187 AVGITLILTDKHLGTCFYDATMGGDPLLYQHLFWFFGHPEVYVVILPVFGLFS 239
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 129 bits (311), Expect = 8e-29
Identities = 77/241 (31%), Positives = 118/241 (48%), Gaps = 6/241 (2%)
Frame = +2
Query: 2 FFGI*SGIIGTSLRLLIRAELGNPGSLI----GDDQIYNTIVTAHAXXXXXXXXXXXXXX 169
+ G +GI+G + +LIR EL G I + IYN +T H
Sbjct: 27 YMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIMLFVFIMPVGIG 86
Query: 170 XXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXV-ENGAGTGWTVYPPLSSN 346
N L+P+++G +++ PR+N I F + +GWT+YPPLS+
Sbjct: 87 FYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSGWTLYPPLSTR 146
Query: 347 IAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFX 523
A G ++DL++ +H+ GISS +F + ++ ++ +T+
Sbjct: 147 DADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIYNFSIIVTSIL 206
Query: 524 XXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 703
AIT LL DRN+N++ +D G DP+LYQHLF FFGHPEVY++ILP FG+
Sbjct: 207 LIGSLPILGVAITGLLLDRNINSTIYDVIG--DPVLYQHLFWFFGHPEVYVIILPVFGLT 264
Query: 704 S 706
S
Sbjct: 265 S 265
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 126 bits (303), Expect = 7e-28
Identities = 86/242 (35%), Positives = 117/242 (48%), Gaps = 8/242 (3%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 184
FG+ + +G + +L+R EL +PG + + YN+++T+H N
Sbjct: 104 FGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NY 162
Query: 185 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENG---AGTGWTVYPPLS----- 340
L+PL++GA D+AFPRIN I F A TGWT+Y PLS
Sbjct: 163 LIPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGEGM 222
Query: 341 SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 520
N A+ G VDL + LHL+G+S+ S+ L +F + +
Sbjct: 223 GNQANAG--VDLMLLGLHLSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQSG 280
Query: 521 XXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 700
AI +LL DRN TSFF AG G IL+QHLF FFGHPEVYI++LP GI
Sbjct: 281 LILFAFPLLGSAIMMLLFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLPPMGI 338
Query: 701 IS 706
IS
Sbjct: 339 IS 340
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 125 bits (301), Expect = 1e-27
Identities = 77/229 (33%), Positives = 105/229 (45%), Gaps = 1/229 (0%)
Frame = +2
Query: 23 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 202
++G LLIR EL PG I D YN T H N ++PL+L
Sbjct: 58 LVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLML 117
Query: 203 GAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAI 382
GA D+AFPR+N + + G TGWT Y P S AH +V +
Sbjct: 118 GAKDVAFPRLNLLSLYIYLAGAVLALWGM-LNGGLDTGWTFYTPYS---AHTTTTVAPVL 173
Query: 383 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 562
F + G SS ++ ++PLFV A+ T+ G +
Sbjct: 174 FGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAIYATS-CIQVLATPVIGLLL 232
Query: 563 ILLTDRNL-NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
+L+T NL FDPA GGDP+L+QHLF F+ HP VYI++LP FG++S
Sbjct: 233 VLVTVENLFGFGMFDPARGGDPVLFQHLFWFYSHPAVYIMVLPSFGVMS 281
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 123 bits (296), Expect = 5e-27
Identities = 73/231 (31%), Positives = 105/231 (45%), Gaps = 3/231 (1%)
Frame = +2
Query: 23 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 202
++G L +++R EL P + + D +YN + T H N L+P ++
Sbjct: 52 LVGGLLAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMI 110
Query: 203 GAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENG-AGTGWTVYPPLS--SNIAHRGRSVD 373
GAPD+AFP++N F G A +GW YPP+S + + H
Sbjct: 111 GAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEF 170
Query: 374 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 553
L I ++ L+GISS F ++P+FV G
Sbjct: 171 LWILAVALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTG 230
Query: 554 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
+LL D + TSFF P GGGDP+L+QH F F+ HP VY+L+LP FGI S
Sbjct: 231 GAVMLLFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGIFS 281
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 123 bits (296), Expect = 5e-27
Identities = 75/227 (33%), Positives = 102/227 (44%)
Frame = +2
Query: 26 IGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 205
+G LL+R +L P + +++N + T H N VPL++G
Sbjct: 49 VGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMPVLTGFA-NYFVPLMIG 107
Query: 206 APDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAIF 385
A D+AFPR+N+ F + GW Y PLSS + VD I
Sbjct: 108 ARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSSLQGVDYWII 167
Query: 386 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 565
L + GI S S ++PLFV + + A A+ +
Sbjct: 168 GLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILALPALNSALAM 227
Query: 566 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
LL DR L ++FFDP GG +L+QH F FGHPEVYILILPGFG+IS
Sbjct: 228 LLIDRWLGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILILPGFGMIS 274
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 122 bits (293), Expect = 1e-26
Identities = 78/227 (34%), Positives = 101/227 (44%)
Frame = +2
Query: 26 IGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 205
IG S +R EL P ++YN ++T H N L+PL++G
Sbjct: 44 IGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVG 102
Query: 206 APDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAIF 385
D+AFPR+N + F V GWT YPPLS G +L I
Sbjct: 103 TEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWIL 159
Query: 386 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 565
SL L G SS +PLF A+ T+ A A+ +
Sbjct: 160 SLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWAMLATSSLILLSTPVLASALIL 219
Query: 566 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
L D TSFF+P GGGDP++YQHLF F+ HP VYI+ILP FG+IS
Sbjct: 220 LSFDLIAGTSFFNPVGGGDPVVYQHLFWFYSHPAVYIMILPFFGVIS 266
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 120 bits (290), Expect = 3e-26
Identities = 76/228 (33%), Positives = 105/228 (46%), Gaps = 1/228 (0%)
Frame = +2
Query: 26 IGTSLRLLIRAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 202
+G L LL+R +L P + IG D+ YN I T H LVPL++
Sbjct: 46 LGGVLALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMV 103
Query: 203 GAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAI 382
G IAFPR+N + V+ G GW Y PLS G+ D+
Sbjct: 104 GTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWA 163
Query: 383 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 562
+ +S+ S D++PLFV ++ +T+F A T
Sbjct: 164 QMITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIAST 223
Query: 563 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
L+ DR + T FF+PA GGD +L+QHLF FFGHPEVYI+ LP G++S
Sbjct: 224 SLILDRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPAVGMVS 271
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 120 bits (289), Expect = 4e-26
Identities = 80/246 (32%), Positives = 112/246 (45%), Gaps = 19/246 (7%)
Frame = +2
Query: 23 IIGTSLRLLIRAELGNP-------GSLI-GDDQI-----YNTIVTAHAXXXXXXXXXXXX 163
++G +L +LIR + G P G L+ G+ + Y I T H
Sbjct: 47 LVGGALAMLIRWQWGFPYRPVPLVGRLLFGESGVIGPATYQQIFTTHGLVMIFFAVTPVL 106
Query: 164 XXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENG-AGTGWTVYPPLS 340
N L+PL++GA D+AFPR+N F G AG GWT Y PLS
Sbjct: 107 IGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVLASFFAPLGSAGAGWTTYTPLS 166
Query: 341 SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 520
+N+ G L + ++ + G+SS ++ +LPL + + +TA
Sbjct: 167 TNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLRAPGMTYMRLPLTIWGLWLTAI 226
Query: 521 XXXXXXXXXAGAITILLTDRNLNTSFFDPA-----GGGDPILYQHLF*FFGHPEVYILIL 685
A +LL DR+ T FF GGGDPIL+QHLF FGHPEVYI+IL
Sbjct: 227 LNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGDPILWQHLFWIFGHPEVYIMIL 286
Query: 686 PGFGII 703
P +GI+
Sbjct: 287 PAWGIL 292
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 119 bits (286), Expect = 8e-26
Identities = 76/228 (33%), Positives = 100/228 (43%)
Frame = +2
Query: 23 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 202
+IG LL+R +LG P + +YN + T H N +VPL++
Sbjct: 47 LIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMPLNVGLG-NYMVPLMI 105
Query: 203 GAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAI 382
GA D+AFPR+N + V GW Y PL+ VD I
Sbjct: 106 GARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFAPTAGVDYWI 165
Query: 383 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 562
+ L G++S + +++PLFV + AF A
Sbjct: 166 VGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAFILIFAFPVLTVATI 225
Query: 563 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
LL DR+ T FF P GGD +L+QHLF FFGHPEVYILILP GIIS
Sbjct: 226 QLLFDRHFGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILILPTMGIIS 273
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 118 bits (283), Expect = 2e-25
Identities = 61/112 (54%), Positives = 72/112 (64%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 184
FG +G+IGT+L LLIRAELG PG+L+GDDQ N IVTAHA N
Sbjct: 23 FGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNW 82
Query: 185 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLS 340
LVPL++GAPD+AFPR+NN+ F VE GAGTGWTVYPPL+
Sbjct: 83 LVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 117 bits (282), Expect = 2e-25
Identities = 71/227 (31%), Positives = 100/227 (44%)
Frame = +2
Query: 26 IGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 205
+G LLIR EL PG I D YN + T H N L+P+++G
Sbjct: 52 LGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIG 111
Query: 206 APDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAIF 385
A D+AFP++N + F V+ GA TGWT Y P S+ + V L F
Sbjct: 112 AKDVAFPKLNLLSFYVYLAGAVVALFGM-VQGGADTGWTFYTPYSTTTITKVVPVLLGAF 170
Query: 386 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 565
L G SS + +LPLFV ++ T+ ++ +
Sbjct: 171 IL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLL 227
Query: 566 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
+ + FDPA GGDP+L+QH F F+ HP VYI++LP +IS
Sbjct: 228 VAVEHAFGWGIFDPARGGDPVLFQHFFWFYSHPAVYIMVLPAMAVIS 274
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 116 bits (279), Expect = 6e-25
Identities = 68/212 (32%), Positives = 97/212 (45%)
Frame = +2
Query: 71 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 250
PG + D + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 251 XXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 430
N T WT YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 431 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 610
+F + LFV + AGA+T+L D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
Query: 611 GGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
GGDP++YQ++F F+ HP VY+ +LP FG S
Sbjct: 180 KGGDPLIYQNIFWFYSHPVVYVQVLPVFGFYS 211
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 116 bits (279), Expect = 6e-25
Identities = 74/228 (32%), Positives = 101/228 (44%), Gaps = 1/228 (0%)
Frame = +2
Query: 26 IGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 205
+G + LLIRAEL PG ++ +N + T H N ++PL +G
Sbjct: 55 LGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFA-NYVLPLQIG 113
Query: 206 APDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGT-GWTVYPPLSSNIAHRGRSVDLAI 382
APD+AFPR+N F GA GWT+Y PLS I G D+ I
Sbjct: 114 APDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHSPGLGSDMWI 173
Query: 383 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 562
+ GI S + ++P+F + + + A
Sbjct: 174 VGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLIFPLLLAAAL 233
Query: 563 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
+L DR L +DPA GG +L+QHLF FFGHPEVY+L LP FGI+S
Sbjct: 234 GVLYDRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFGIVS 280
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 115 bits (277), Expect = 1e-24
Identities = 72/223 (32%), Positives = 102/223 (45%), Gaps = 2/223 (0%)
Frame = +2
Query: 44 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 223
LL+R EL + +YN ++T+H N +PL++ A D+AF
Sbjct: 91 LLMRTELATSSETLISPSLYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAF 149
Query: 224 PRINNIRFXXXXXXXXXXXXXXXVEN--GAGTGWTVYPPLSSNIAHRGRSVDLAIFSLHL 397
PRIN I F + A T WT+Y PLS ++ +VD+ + LHL
Sbjct: 150 PRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHL 207
Query: 398 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 577
G+S+ + L +F + + A+ +LL D
Sbjct: 208 TGVSATMGAINFIATIFTERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLD 267
Query: 578 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
RN T+FF AGG DPI +QHLF FFGHPEVY+L+LP GI+S
Sbjct: 268 RNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVLPPMGIVS 309
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 111 bits (268), Expect = 1e-23
Identities = 64/136 (47%), Positives = 77/136 (56%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 184
FGI SG++GTSL L+IR ELG PGSL+ DDQ+YN +VTAH N
Sbjct: 6 FGIWSGLLGTSLSLMIRTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNW 65
Query: 185 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGR 364
LVPL+LGAPD+AFPR+NN+ F V+ G + PL G
Sbjct: 66 LVPLMLGAPDMAFPRMNNMSF-GFFPLHWHYYSFFTVKGGLARD-ELSTPLYLVTISAGP 123
Query: 365 SVDLAIFSLHLAGISS 412
SVDLAIF LHLAG+SS
Sbjct: 124 SVDLAIFPLHLAGVSS 139
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 109 bits (263), Expect = 5e-23
Identities = 73/230 (31%), Positives = 102/230 (44%), Gaps = 2/230 (0%)
Frame = +2
Query: 23 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 202
+I SL LL R +L P S Y VT H N +VPL +
Sbjct: 37 LIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFASPFAFGLA-NYIVPLQI 95
Query: 203 GAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGA-GTGWTVYPPLSSNIAHRGRSVDLA 379
GA D+AFPR+N + + E+GA GWT+Y PL++ I G +DLA
Sbjct: 96 GARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYTPGIGLDLA 155
Query: 380 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 559
++ L +S + ++P+F ++ T
Sbjct: 156 ALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWAFPPLMVGG 215
Query: 560 TILLTDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
+LL DRNL T FF +PAGG +L+ HLF FFGHPEVYIL+ P G ++
Sbjct: 216 ALLLLDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVYILLFPALGAMA 263
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 108 bits (259), Expect = 2e-22
Identities = 62/228 (27%), Positives = 100/228 (43%)
Frame = +2
Query: 23 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 202
++G + IR +L P + Q YN ++T H N +VPL +
Sbjct: 40 LVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAMPLLFALM-NAVVPLQI 98
Query: 203 GAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAI 382
GA D++FP +N + F + GWT Y LS + +G +D +
Sbjct: 99 GARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYASLS--LHSKGHGIDFFV 156
Query: 383 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 562
L ++G+ + ++ +LPLF + + +
Sbjct: 157 LGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTTFVASALILFAFPPLTVGLA 216
Query: 563 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
+++ DR T+FF+P GG+ ++++HLF FGHPEVYILILP FGI S
Sbjct: 217 LMMLDRLFGTNFFNPELGGNTVIWEHLFWIFGHPEVYILILPAFGIFS 264
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 107 bits (256), Expect = 3e-22
Identities = 67/221 (30%), Positives = 93/221 (42%)
Frame = +2
Query: 44 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 223
L++RA+L P + D YN I T H N +VPL +GA D+AF
Sbjct: 76 LMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAF 134
Query: 224 PRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAIFSLHLAG 403
P +NN+ F + GWT Y PL+SN G + + L +AG
Sbjct: 135 PYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLGLQIAG 194
Query: 404 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 583
I + + ++P+F IT A+ +L DR
Sbjct: 195 IGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLTVALALLSFDRL 254
Query: 584 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
FF GG P+L+ +LF +GHPEVYI+ILP FGI S
Sbjct: 255 FGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGIFS 295
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 105 bits (252), Expect = 1e-21
Identities = 65/222 (29%), Positives = 97/222 (43%), Gaps = 1/222 (0%)
Frame = +2
Query: 44 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 223
LLIR +L P + + YN I+T H N +VPL+LGA D+A
Sbjct: 47 LLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVAL 106
Query: 224 PRINNIRFXXXXXXXXXXXXXXXVENGA-GTGWTVYPPLSSNIAHRGRSVDLAIFSLHLA 400
PR+N + GA GWT Y P S A VD + ++ L
Sbjct: 107 PRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILLL 163
Query: 401 GISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDR 580
G SS S ++P++V +V + A ++L +R
Sbjct: 164 GFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLER 223
Query: 581 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
+ S+F+PA GGDP+L+Q F F+ HP VY+++LP GI++
Sbjct: 224 KIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPYLGILA 265
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 105 bits (251), Expect = 1e-21
Identities = 63/182 (34%), Positives = 87/182 (47%), Gaps = 6/182 (3%)
Frame = +2
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXV-ENGAGTGWTVYPPLSSNIAH 355
N LVP ++GAPD+ +PRIN + F ++G GWT+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 356 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 535
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 536 XXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 700
A +LL +R+L FF DPA GDP L+QH+F FFGHPEVYIL+LP G+
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAMGL 263
Query: 701 IS 706
+S
Sbjct: 264 VS 265
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 104 bits (249), Expect = 2e-21
Identities = 73/227 (32%), Positives = 102/227 (44%), Gaps = 1/227 (0%)
Frame = +2
Query: 26 IGTSLRLLIRAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 202
+G +L LLIRAEL PG+ I D +N + T H N VP+++
Sbjct: 37 LGGALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMV 95
Query: 203 GAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAI 382
D+A+P++N I F A W PP S I+ G + D+ I
Sbjct: 96 RYKDMAYPKLNAIAFWMIPPAGALVWLGF-----ADFSWYATPPYSV-ISAPGPAADMWI 149
Query: 383 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 562
F L + GISS S Q+PL + ++ A A+
Sbjct: 150 FGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVALPTFAAALL 209
Query: 563 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 703
+LLTDR + FF+PA GGDPI Y HLF F HPEVY+L++P G++
Sbjct: 210 MLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPAIGMM 256
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 103 bits (247), Expect = 4e-21
Identities = 66/228 (28%), Positives = 96/228 (42%)
Frame = +2
Query: 23 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 202
I+G L LL+R +L P + D + YN + + H ++PL+L
Sbjct: 52 ILGVILALLMRLQLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLML 110
Query: 203 GAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAI 382
G D+ FPR+N + + GW YPPL+ G +D
Sbjct: 111 GTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYT 170
Query: 383 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 562
+ IS+ S +++P+FV AV + +F A
Sbjct: 171 TVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPPLVIASL 230
Query: 563 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
+L DR FF A GDPIL+QHLF FFGHPEVYI+ +P G++S
Sbjct: 231 MLALDRMAGMHFFT-AASGDPILWQHLFWFFGHPEVYIIFIPALGMVS 277
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 103 bits (247), Expect = 4e-21
Identities = 66/228 (28%), Positives = 94/228 (41%)
Frame = +2
Query: 23 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 202
++G L +LIRA+L P S + YN + T H L+P +L
Sbjct: 45 VVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLL 103
Query: 203 GAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAI 382
G+ D+AFPR+ F +GW +YPPLSS + G + D +
Sbjct: 104 GSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWL 163
Query: 383 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 562
+ IS+ S ++P+F +TA
Sbjct: 164 IGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPPLILGSI 223
Query: 563 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
+L +R + FF A GGD +L+QHLF FGHPEVYI+ LP G IS
Sbjct: 224 LLELERAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYIIFLPAAGAIS 271
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 103 bits (246), Expect = 6e-21
Identities = 77/244 (31%), Positives = 105/244 (43%), Gaps = 15/244 (6%)
Frame = +2
Query: 20 GIIGTSLRLLIRAELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPL 196
G++ L L+R +LG PG+ D Y +T H N L+PL
Sbjct: 53 GLVALVLSWLMRLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPL 112
Query: 197 ILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENG-AGTGWTVYPP--LSSNIAHRGRS 367
++GA D+ FP +N + + V G G GWT+YPP + S +
Sbjct: 113 MVGARDMVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDWG 172
Query: 368 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXXX 544
+ L + SL L I + +LPL V + T
Sbjct: 173 IVLMLSSLILFIIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPAL 232
Query: 545 XAGAITILLTDRNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVYILILPGF 694
G++ +LL DR L TSFF P GGG P+L+QHLF FFGHPEVYI+ LP F
Sbjct: 233 FVGSVMLLL-DRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALPAF 291
Query: 695 GIIS 706
GI+S
Sbjct: 292 GIVS 295
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 102 bits (245), Expect = 8e-21
Identities = 67/219 (30%), Positives = 97/219 (44%), Gaps = 15/219 (6%)
Frame = +2
Query: 95 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 274
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 275 XXXXXXVE-NGAGTGWTVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 442
+ +GA GWT YPPLS ++ G + L + + G+SS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
Query: 443 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----- 607
+ +LPL + A+ ITA A ++L DR + T FF P
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGLVV 265
Query: 608 ------AGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
AGGG P+L+QHLF F+ HP VYI+ILP G++S
Sbjct: 266 NNSPMAAGGGQPLLWQHLFWFYSHPAVYIMILPAMGMVS 304
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 100 bits (239), Expect = 4e-20
Identities = 67/224 (29%), Positives = 98/224 (43%), Gaps = 2/224 (0%)
Frame = +2
Query: 38 LRLLIRAELGNPGSLIGDD-QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 214
+ +LIR EL G I DD +YNT + H N +PL++GA D
Sbjct: 35 MAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKD 94
Query: 215 IAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAIFSLH 394
+AFPR+N + + + WT YPP S I H + FS+
Sbjct: 95 VAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPPYSI-ITHGNTA--FYTFSVL 151
Query: 395 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG-AITILL 571
L G +S +++L +FV A + AF G A+T+L
Sbjct: 152 LLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LAAFVLQLIFVPVLGTAVTMLT 210
Query: 572 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 703
D+ + T FFD A GGD + YQ+LF F+ HP VY++ LP ++
Sbjct: 211 FDKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFLPFMAMV 254
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 99.5 bits (237), Expect = 7e-20
Identities = 63/228 (27%), Positives = 95/228 (41%)
Frame = +2
Query: 23 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 202
+I LL+R +L P + + YN + T H L+PL++
Sbjct: 71 LIAGVFALLVRLQLMVPENTFLSSETYNQLFTMHGTIMMFLFAIPMLEGFAVY-LIPLMI 129
Query: 203 GAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAI 382
GA D+ FPR+ + + GW +Y PLS++ G S D +
Sbjct: 130 GARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGLSADFWL 189
Query: 383 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 562
+ LA I+S S ++P+ + + TAF
Sbjct: 190 IGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPPLIIGSI 249
Query: 563 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
+L +R L FFD GGDP+L+QHLF FGHPEVYI+ LP G+++
Sbjct: 250 LLEAERLLGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLPAAGMVA 297
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 98.3 bits (234), Expect = 2e-19
Identities = 64/228 (28%), Positives = 95/228 (41%)
Frame = +2
Query: 23 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 202
+IG L +LIRA+L +P S + Y + T H L+P +L
Sbjct: 45 LIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKML 103
Query: 203 GAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAI 382
G+ D+A+PR++ F +GW +YPPL+S + G + D +
Sbjct: 104 GSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWL 163
Query: 383 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 562
+ IS+ S D++P++ +TA
Sbjct: 164 LGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPPLILGSI 223
Query: 563 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
+L +R FF A GGD +L+QHLF FGHPEVYI+ LP G IS
Sbjct: 224 LLELERAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLPAAGAIS 271
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 98.3 bits (234), Expect = 2e-19
Identities = 64/228 (28%), Positives = 97/228 (42%)
Frame = +2
Query: 23 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 202
++G L++R +L P + + Y+++ T H N L PL+L
Sbjct: 65 LLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFLYALPVLSGFA-NYLWPLML 123
Query: 203 GAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAI 382
G+ D+AFPR+ + + GW Y PL+S G ++D+
Sbjct: 124 GSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSAGANIDIYG 183
Query: 383 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 562
+ L GIS+ S D+LP+ V + + A
Sbjct: 184 LGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAVPSVSLAFL 243
Query: 563 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
+L DRN T FFD A GG P+L+QHLF F HP VY+++LP GI+S
Sbjct: 244 LLWLDRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAMGIVS 291
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 95.9 bits (228), Expect = 9e-19
Identities = 57/176 (32%), Positives = 80/176 (45%)
Frame = +2
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHR 358
N +VPL +GA D+AFP +N++ F V N A TGW YPPL+
Sbjct: 125 NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWVAYPPLAELGFSP 184
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
VD I++L ++GI + +P+F
Sbjct: 185 DVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFTWTCTWANVLIATSF 244
Query: 539 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
GA+ +L DR L+ FF GG+ ++Y +LF +GHPEVYIL+LP FGI S
Sbjct: 245 PILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYILVLPAFGIFS 300
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 95.1 bits (226), Expect = 2e-18
Identities = 68/235 (28%), Positives = 98/235 (41%), Gaps = 1/235 (0%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNP-GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 181
F I +GI+G L++R +L P L+G D YN I T H
Sbjct: 53 FFILAGILG----LIMRTQLAVPENDLVGQD-FYNQIFTVHGTTMMFLFAVPVVEALGVM 107
Query: 182 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRG 361
L+P +L A D+ FPR++ + GW +YPPL+ G
Sbjct: 108 -LLPQMLAARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPG 166
Query: 362 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 541
+ D + + IS+ S ++P+F A+ I A
Sbjct: 167 DNADFWLLGIGFIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIAFP 226
Query: 542 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A +L +R+ FF GGDP+L+QHLF FFGHPEVYI+ LP G++S
Sbjct: 227 AVILATMLLEIERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVYIIFLPAAGLVS 281
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 94.7 bits (225), Expect = 2e-18
Identities = 72/208 (34%), Positives = 84/208 (40%)
Frame = +2
Query: 29 GTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 208
G L R L G +IG QI VTA A L PL +GA
Sbjct: 20 GXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGA 79
Query: 209 PDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAIFS 388
P +A PR+ N+ F + G G W VYPP SS +AH +VDL IF
Sbjct: 80 PXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFX 139
Query: 389 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 568
LHLAGISS ++ LF A AIT+L
Sbjct: 140 LHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPVLAAAITML 199
Query: 569 LTDRNLNTSFFDPAGGGDPILYQHLF*F 652
R N SFF P G P + F F
Sbjct: 200 XXXRXXNXSFFXPXXXGXPXXFPTFFXF 227
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 94.7 bits (225), Expect = 2e-18
Identities = 56/176 (31%), Positives = 78/176 (44%)
Frame = +2
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHR 358
N VPL +GA D+AFP +N++ F V A TGW YPPL+
Sbjct: 124 NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSP 183
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
G VD I++L L+G+ + +P+F
Sbjct: 184 GVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPIFTWTCTWANVLIVASF 243
Query: 539 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A+ +L DR L+ F GG+P++Y +LF +GHPEVYILILP FG+ S
Sbjct: 244 PILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYILILPAFGVFS 299
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 94.3 bits (224), Expect = 3e-18
Identities = 65/232 (28%), Positives = 95/232 (40%), Gaps = 4/232 (1%)
Frame = +2
Query: 23 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 202
++G ++R +L PG + + +N + T HA N +PL++
Sbjct: 45 LVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMI 103
Query: 203 GAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAG----TGWTVYPPLSSNIAHRGRSV 370
GA D+AFPR+N + + G GW Y L+S G
Sbjct: 104 GARDVAFPRLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSVQFTSGLGP 163
Query: 371 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 550
D L L GI + + ++P+FV +T+
Sbjct: 164 DFWTLGLLLLGIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAIIIFAFPSVT 223
Query: 551 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A+ +L+ DR +FF+ GG + YQHLF FGHPEVYILILP GIIS
Sbjct: 224 VALIMLMFDRTFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILILPAMGIIS 275
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 91.9 bits (218), Expect = 1e-17
Identities = 71/237 (29%), Positives = 103/237 (43%), Gaps = 14/237 (5%)
Frame = +2
Query: 38 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 217
LR ++ + G L + + Y +VT H N L+PL +GA D+
Sbjct: 83 LRPILGGWITEAGKL--EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDM 140
Query: 218 AFPRINNIRFXXXXXXXXXXXXXXXVENGAGTG-WTVYPPLSS---NIAHRGRSVDLAIF 385
A +N + + +E G +G W +YPPLS+ ++ G + + +
Sbjct: 141 ASGFMNMLSYWFFFGSSVIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLI 200
Query: 386 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 565
S+ L IS SF +LPL + A ITA A +
Sbjct: 201 SMALFIISVLLGGINYITTVINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALL 260
Query: 566 LLTDRNLNTSFFDP----AG------GGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
L+ DR+L TSFF AG GG P+L+QHLF F GHPEVYI+++P GI S
Sbjct: 261 LIFDRSLGTSFFLSEIYIAGEALHHQGGSPVLFQHLFWFLGHPEVYIVLIPALGITS 317
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 91.5 bits (217), Expect = 2e-17
Identities = 51/117 (43%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 178
F + + +IGT+ +LIR EL PG L GD Q+YN I+TAHA
Sbjct: 20 FAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFG 79
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNI 349
N LVP+++GAPD+AFPR+NNI F VE GAGTGWTV LS I
Sbjct: 80 NYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKCKLSQII 136
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 89.8 bits (213), Expect = 6e-17
Identities = 58/177 (32%), Positives = 80/177 (45%), Gaps = 1/177 (0%)
Frame = +2
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLS-SNIAH 355
N LVP ++GA D+ +P+IN + F + GW +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 356 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 535
G +L +L L+G+SS + ++PLFV TA
Sbjct: 139 YGLGTNLIQIALILSGLSSTLTGVNFVMTITKMKKVP--YLKMPLFVWGFFTTAILMIIA 196
Query: 536 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
+ +R T FFD A GG P+L+Q LF FFGHPEVYILILP G++S
Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAMGLVS 253
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 85.8 bits (203), Expect = 9e-16
Identities = 50/134 (37%), Positives = 68/134 (50%), Gaps = 3/134 (2%)
Frame = +2
Query: 314 GWTVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 484
GWT P SSNI + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 485 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 664
P ++ +T A+ ++ DR+ T+FF+ A GGDPIL QHLF FFGHP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402
Query: 665 EVYILILPGFGIIS 706
EVY+LI+P FG I+
Sbjct: 403 EVYVLIIPTFGFIN 416
Score = 50.8 bits (116), Expect = 3e-05
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +2
Query: 2 FFGI*SGIIGTSLRLLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXX 175
+F + +G+ G +L +IR EL +P S GD Y +VTAH
Sbjct: 69 YFSMVTGLSGAALATMIRMELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGF 128
Query: 176 XN*LVPLILGAPDIAFPRINNIRF 247
N L+P +G+ D+A+PR+N+I F
Sbjct: 129 ANFLIPYHVGSKDVAYPRLNSIGF 152
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 85.4 bits (202), Expect = 1e-15
Identities = 58/225 (25%), Positives = 85/225 (37%)
Frame = +2
Query: 26 IGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 205
+G L L IR +L P + YN ++T HA N +PL LG
Sbjct: 49 LGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLIPLGLFGFGNYFLPLQLG 108
Query: 206 APDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAIF 385
D+A PR+N GWT Y PL+ + G SV +
Sbjct: 109 VRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYPLTMDGNQTGVSVFMVAV 168
Query: 386 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 565
L+ G+ S ++P+F ++ T+ A +
Sbjct: 169 ILN--GLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSIFATSILQLLTLGGLTAAALL 226
Query: 566 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 700
+ L S F+P GG P+LYQ F F+ HP VY+++LP GI
Sbjct: 227 TYLEIKLGLSMFNPGIGGVPVLYQQFFWFYSHPAVYVMLLPYLGI 271
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 85.4 bits (202), Expect = 1e-15
Identities = 51/174 (29%), Positives = 77/174 (44%)
Frame = +2
Query: 185 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGR 364
L+P +LGA D+ FPR++ F V GW + PPL++ G
Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226
Query: 365 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 544
+ D + + IS+ + ++P+F A+ + A
Sbjct: 227 NADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPA 286
Query: 545 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A +L +R + FF GGDP+L+QHLF FFGHPEVYI+ LP G++S
Sbjct: 287 VILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLPAAGMVS 340
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 85.4 bits (202), Expect = 1e-15
Identities = 56/176 (31%), Positives = 75/176 (42%)
Frame = +2
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHR 358
N +VPL +GA D+AFP +N+I V + GW YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 539 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
L DR L+ FF GG+ + + ++F FGHPEVYILILP FG+ S
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILPAFGVYS 319
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 85.4 bits (202), Expect = 1e-15
Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 178
FG +G++GT +LIR EL PG+ I G+ Q+YN ++TAHA
Sbjct: 24 FGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFG 83
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTV 325
N VP+++G+PD+AFPR+NNI F VE G G+GWTV
Sbjct: 84 NWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 85.4 bits (202), Expect = 1e-15
Identities = 40/65 (61%), Positives = 45/65 (69%)
Frame = +2
Query: 194 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVD 373
L+LGAPD+AFPR+NN+ F VENGAGTGWTVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 374 LAIFS 388
LAI+S
Sbjct: 61 LAIYS 65
Score = 59.7 bits (138), Expect = 7e-08
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +1
Query: 493 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 660
CM C +Y TCFS S+Y IIN K KY IF W P +STFILIFWT
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 84.2 bits (199), Expect = 3e-15
Identities = 57/218 (26%), Positives = 86/218 (39%), Gaps = 14/218 (6%)
Frame = +2
Query: 95 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 274
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 275 XXXXXXVENGAGTGWTVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 445
G GWT YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 446 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG---- 613
+F +LP+ + + ITA + + DR T FF P+G
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVIN 269
Query: 614 -------GGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
GG P+L+QHLF F+ HP VYI++LP G++S
Sbjct: 270 NAAPTVGGGQPLLWQHLFWFYSHPAVYIMLLPIMGMVS 307
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 83.8 bits (198), Expect = 4e-15
Identities = 51/176 (28%), Positives = 77/176 (43%)
Frame = +2
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHR 358
N ++PL +G+ D+AFP +N + F + A TGW YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
VD +S+ ++GI + F+++ +F+ +
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238
Query: 539 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
+ + DR L+T F+ GG +LY +L +GHPEVYILILP FGI S
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILPSFGIFS 294
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 83.0 bits (196), Expect = 7e-15
Identities = 55/217 (25%), Positives = 85/217 (39%)
Frame = +2
Query: 38 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 217
L +L+R +L PG+ +N T H L+P +LGA D+
Sbjct: 78 LAVLMRVQLAVPGNDFLSADRFNQFFTMHGSAMMFLFAVPMFEAISII-LLPALLGARDL 136
Query: 218 AFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAIFSLHL 397
FPR++ + + +GW +YPPL++ G D+ + L
Sbjct: 137 PFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGLGSDIWLLGLSF 194
Query: 398 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 577
++S + +PL+ V + + +
Sbjct: 195 IEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPPLIAGDLLFEME 254
Query: 578 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 688
R + FFDP GGDP+L+QHLF FGHPEVYI+ LP
Sbjct: 255 RGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFLP 291
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 82.2 bits (194), Expect = 1e-14
Identities = 48/117 (41%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 178
F + S +IGT L +IR EL N GS L G+ Q +N ++TAHA
Sbjct: 26 FALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFG 85
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNI 349
N L+PL+LGA D+AF R+NNI F VE GAGTGWTV SS +
Sbjct: 86 NYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 81.8 bits (193), Expect = 2e-14
Identities = 66/230 (28%), Positives = 96/230 (41%), Gaps = 16/230 (6%)
Frame = +2
Query: 65 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 244
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 245 FXXXXXXXXXXXXXXXVENGAG-TGWTVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 409
F + +G +GWT Y LS+ A G + ++ + +A I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193
Query: 410 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 589
S S ++P+ A IT+ A +L DR
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253
Query: 590 TSFFDPAG-----------GGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
TSFF P+G GG +L+QHLF FFGHPEVYI ILP GI+S
Sbjct: 254 TSFFIPSGLVFNDHVIPHGGGSALLWQHLFWFFGHPEVYIAILPAMGIVS 303
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 80.6 bits (190), Expect = 3e-14
Identities = 35/42 (83%), Positives = 38/42 (90%)
Frame = +2
Query: 581 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
N T+FFDPAGGGD IL+QHLF FFGHPEVYILILPGFG+IS
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMIS 232
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 78.6 bits (185), Expect = 1e-13
Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 1/172 (0%)
Frame = +2
Query: 185 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENG-AGTGWTVYPPLSSNIAHRG 361
L+PL +G+ D+ +PR+N + + + G TGWTVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 362 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 541
D A ++ L GI + LPLFV AV A
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230
Query: 542 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFG 697
G +LL ++ S++ GG +++++LF +FGHPEVY+L+LPG G
Sbjct: 231 EITGLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFGHPEVYLLLLPGTG 281
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 78.2 bits (184), Expect = 2e-13
Identities = 61/241 (25%), Positives = 94/241 (39%), Gaps = 13/241 (5%)
Frame = +2
Query: 23 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 202
+ G L LL R EL + G+ + YN V+ H N LVPL +
Sbjct: 38 VFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFISPFAFGFA-NYLVPLQI 96
Query: 203 GAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSN--IAHRGRSVDL 376
GA D+AFPR+N + + GWT+Y PL++ I G
Sbjct: 97 GADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAYIPGEGLGATS 156
Query: 377 AIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGA 556
+ +L + + +P+F ++ +T + A
Sbjct: 157 VVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMMLFAFAALLAA 216
Query: 557 ITILLTDRNLNTSFF-----------DPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 703
+ IL +D L T++F D G +L+ HLF FFGHPEVYI+ P G++
Sbjct: 217 LMILASDHILGTTYFQYSIDGTTMATDADNPGASLLWAHLFWFFGHPEVYIVFFPALGVM 276
Query: 704 S 706
+
Sbjct: 277 A 277
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 76.2 bits (179), Expect = 7e-13
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 178
F I G+ GT++ ++IR EL PG+ L G+ Q++N +V HA
Sbjct: 21 FAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFG 80
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTV 325
N L+PL++GA D++F R+NNI F VE+GAGTGWTV
Sbjct: 81 NYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 75.4 bits (177), Expect = 1e-12
Identities = 49/176 (27%), Positives = 75/176 (42%)
Frame = +2
Query: 179 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHR 358
N +VPL +GA D+AFP +N + V + + GW PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 539 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 706
A+ +L DR L T FF GG+ +LY +LF +GHPEVY ++LP FG IS
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGFIS 318
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 70.9 bits (166), Expect = 3e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +2
Query: 332 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 511
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 512 TAFXXXXXXXXXAGAITILLTDR 580
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.5 bits (78), Expect = 1.3
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +1
Query: 166 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYINNFKKN 291
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 64.9 bits (151), Expect = 2e-09
Identities = 29/40 (72%), Positives = 31/40 (77%)
Frame = +2
Query: 293 VENGAGTGWTVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 412
VE G G GWTVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 13 VEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/42 (69%), Positives = 30/42 (71%)
Frame = +1
Query: 580 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWDNF 705
K KYIIF S W F+STFILIFWT SLYFNFT IW NF
Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYNF 48
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 58.4 bits (135), Expect = 2e-07
Identities = 31/70 (44%), Positives = 40/70 (57%)
Frame = +2
Query: 476 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 655
DQ+ LF ++ IT AG IT+LL+DRN N FF GG PIL+Q++ F
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71
Query: 656 GHPEVYILIL 685
GH +V LIL
Sbjct: 72 GHTDVLFLIL 81
>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
Sub-unit I of an aa3-type cytochrome oxidase -
Thiobacillus ferrooxidans (Acidithiobacillus
ferrooxidans)
Length = 627
Score = 52.0 bits (119), Expect = 1e-05
Identities = 41/172 (23%), Positives = 64/172 (37%)
Frame = +2
Query: 185 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGR 364
L+PL+LG ++ FP++ + + G TGW YPPL+ N G
Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSPTT-GGFQTGWWGYPPLAQN---SGS 235
Query: 365 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 544
+ + ++S S ++P+FV + A
Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGTMVYMRAKGMSLGRVPIFVWGLFAAATTLVVESPA 295
Query: 545 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 700
+ L+D + F+ G P+ Y F F HPEVY+ ILP F I
Sbjct: 296 TYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLFHPEVYVFILPAFAI 346
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 50.8 bits (116), Expect = 3e-05
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHA 127
F I SG+IG+S+ +LIR EL GS++ +QIYNT+VT+HA
Sbjct: 6 FAIWSGLIGSSMSMLIRLELETCGSVLRSEQIYNTLVTSHA 46
Score = 37.1 bits (82), Expect = 0.42
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +2
Query: 359 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 538
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 539 XXXAGAITILLTDRNLNT 592
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 50.0 bits (114), Expect = 6e-05
Identities = 49/197 (24%), Positives = 62/197 (31%)
Frame = +1
Query: 1 FFWYLIRNNWNIFKTFNSS*IRKSRIINWR*SNL*YYCNSPCXXXXXXXXXXXXXWRIWK 180
+ WYL RN+ + KT + +R NL YC C I K
Sbjct: 5 YLWYLSRNSSDCPKTNCPPWTKTTRNSYRGRPNLQRYCYCSCLRYNFLYSNTYYNSGIRK 64
Query: 181 LXXXXXXXXXXXXXPTNK*YKILTPTPLPYINNFKKNCRKWCRNRMDSLPPTFI*YRT*R 360
L P NK +KIL TPL Y N C K C + ++SLP Y T
Sbjct: 65 LNTPSNIGSTSHGFPPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLG 124
Query: 361 KIRRSCYFFTTFSXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXXXTT 540
R +F T CM +YS +
Sbjct: 125 PFRSYNHFCPTSCSSVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTSFSP 184
Query: 541 CFSWSYYNIINRSKLKY 591
S+YNI K KY
Sbjct: 185 SIGSSHYNITYWPKPKY 201
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 48.0 bits (109), Expect = 2e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +1
Query: 496 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 648
M C +YS +TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
buchholtzi (Butterflyfish)
Length = 184
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +2
Query: 650 FFGHPEVYILILPGFGIIS 706
FFGHPEVYILILPGFG+IS
Sbjct: 2 FFGHPEVYILILPGFGMIS 20
>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
Digenea|Rep: Cytochrome c oxidase subunit I -
Echinostoma hortense
Length = 154
Score = 40.7 bits (91), Expect = 0.034
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +2
Query: 650 FFGHPEVYILILPGFGIIS 706
FFGHPEVY+LILP FGI+S
Sbjct: 1 FFGHPEVYVLILPVFGIVS 19
>UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=2;
Saccharomycetaceae|Rep: Putative COX1/OXI3 intron 2
protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 854
Score = 40.3 bits (90), Expect = 0.045
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Frame = +2
Query: 17 SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHA 127
SG+ GT++ L+IR EL PGS L G+ Q++N +V HA
Sbjct: 25 SGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHA 63
>UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia
polymorpha|Rep: CoxI intron2 ORF - Marchantia polymorpha
(Liverwort)
Length = 802
Score = 35.5 bits (78), Expect = 1.3
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLI--GDDQIYN 106
FG +G++GT +LIR EL PG+ I G+ Q+YN
Sbjct: 24 FGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|Rep:
Maturase-like protein - Pellia epiphylla
Length = 843
Score = 35.5 bits (78), Expect = 1.3
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 5 FGI*SGIIGTSLRLLIRAELGNPGSLI--GDDQIYN 106
FG +G++GT +LIR EL PG+ I G+ Q+YN
Sbjct: 24 FGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3
precursor (DNA endonuclease I- SceIII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI3 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceIII)]; n=5; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI3 precursor (DNA
endonuclease I- SceIII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI3 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceIII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 403
Score = 35.5 bits (78), Expect = 1.3
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Frame = +2
Query: 17 SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIV 115
SG+ GT++ L+IR EL PGS L G+ Q++N +V
Sbjct: 25 SGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLV 59
>UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1;
Harmonia axyridis|Rep: Cytochrome c oxidase subunit 2 -
Harmonia axyridis (Multicolored Asian lady beetle)
Length = 193
Score = 34.3 bits (75), Expect = 3.0
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 637 TFILIFWTS*SLYFNFTRIWDNF 705
+ ++IFW+S SLYFN IW NF
Sbjct: 2 SLVMIFWSSSSLYFNSPSIWYNF 24
>UniRef50_Q6EGM1 Cluster: Cytochrome c oxidase subunit I; n=1;
Brotia episcopalis|Rep: Cytochrome c oxidase subunit I -
Brotia episcopalis
Length = 215
Score = 34.3 bits (75), Expect = 3.0
Identities = 46/187 (24%), Positives = 60/187 (32%)
Frame = +2
Query: 71 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 250
PG+ ++ ++ I TA A + L PL A +AF NN+ F
Sbjct: 24 PGAACVVNRPFSVIATAPAFVMTFCWATPTTTGGFGSWLAPLTFVAAVMAFRPPNNMNFW 83
Query: 251 XXXXXXXXXXXXXXVENGAGTGWTVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 430
NGA WT + L+ N+A +LAIF AG
Sbjct: 84 RLPAAAWPWRFWAAAVNGAVIVWTAFRALAKNLAPVVVFANLAIFFRRWAGALFIFVAAN 143
Query: 431 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 610
LFV V A A AI LT N N + + A
Sbjct: 144 FIMTAINMPWPVMPCKPPALFVWFVKTMAMAAWPLAAAPAVAIMTPLTVANCNMACCNRA 203
Query: 611 GGGDPIL 631
GG IL
Sbjct: 204 GGVVAIL 210
>UniRef50_A5H2T8 Cluster: Cytochrome c oxidase subunit 1; n=1;
Pichia guilliermondii|Rep: Cytochrome c oxidase subunit
1 - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 168
Score = 34.3 bits (75), Expect = 3.0
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +2
Query: 17 SGIIGTSLRLLIRAEL--GNPGSLIGDDQIYNTIVTAHA 127
+ ++GT + ++IR EL GN G++Q YN ++T HA
Sbjct: 3 ASMVGTGMSVIIRMELSSGNSQFFHGNNQAYNVLITGHA 41
>UniRef50_Q0BZ17 Cluster: Amidohydrolase family/endoribonuclease
L-PSP; n=1; Hyphomonas neptunium ATCC 15444|Rep:
Amidohydrolase family/endoribonuclease L-PSP -
Hyphomonas neptunium (strain ATCC 15444)
Length = 755
Score = 33.9 bits (74), Expect = 3.9
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -3
Query: 321 VHPVPAPFSTILLEIINIREGGRSQNLILFIRGNAISG-APSIRG 190
+H AP+S + + ++++R+G S ++ + GN I+G AP + G
Sbjct: 164 LHRYGAPYSILNVRVLDVRDGSLSAPSVVTVSGNVITGVAPYVEG 208
>UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4;
Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I -
Roseiflexus sp. RS-1
Length = 561
Score = 33.9 bits (74), Expect = 3.9
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 614 GGDPILYQHLF*FFGHPEVYILILPGF 694
G DP+L + LF F GHP VY +LP +
Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLPAY 250
>UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 592
Score = 33.5 bits (73), Expect = 5.2
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 620 DPILYQHLF*FFGHPEVYILILPGF 694
+P+L + LF FFGHP VY +LP +
Sbjct: 209 NPLLARTLFWFFGHPVVYFWLLPAY 233
>UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=1;
Saccharomyces cerevisiae|Rep: Putative COX1/OXI3 intron
1 protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 834
Score = 33.5 bits (73), Expect = 5.2
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +2
Query: 17 SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTA 121
SG+ GT++ L+IR EL PGS L G+ Q++N T+
Sbjct: 25 SGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNGAPTS 61
>UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7;
Locustacarus buchneri|Rep: Cytochrome oxidase subunit 1
- Locustacarus buchneri
Length = 185
Score = 33.1 bits (72), Expect = 6.9
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +1
Query: 508 DYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFT 687
+Y+ TT S S +N N SKL++I+ S PN I ILI T L+ N T
Sbjct: 94 NYNNTTDYFTTSSSRSNHNTTNSSKLQHILLRSFGGSGPNPIPASILILRTPSGLHSNST 153
Query: 688 RI 693
I
Sbjct: 154 SI 155
>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1420
Score = 32.7 bits (71), Expect = 9.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 579 RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 457
+++NN +I S NNN N++ T TN + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078
>UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3;
n=1; Candida albicans|Rep: Putative uncharacterized
protein CLN3 - Candida albicans (Yeast)
Length = 785
Score = 32.7 bits (71), Expect = 9.1
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -3
Query: 633 YKIGSPPPAGSKNDVFKFRSVNN---IVIAPAKTGSDNNNKNAVIPTAH 496
Y++ +PP + +KN K S NN IA T ++NNN N+ +P H
Sbjct: 572 YQMVTPPNSANKNSN-KSNSANNNNTTTIATTTTTTNNNNNNSQLPAPH 619
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,540,408
Number of Sequences: 1657284
Number of extensions: 9753061
Number of successful extensions: 22778
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 21005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22452
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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