Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30203
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ...    28   1.6  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    27   3.8  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.0  

>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
           Atp23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 185

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 623 NTYNTRMCKQIKSRSMTPSSQWSGRLRF---KTF*EH 724
           N    + C +I++ SM+   +W+  LRF   KTF +H
Sbjct: 102 NNLRHQACSEIRASSMSGECRWTKELRFGNIKTFRKH 138


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 272 FCRQRKHLSSFSGKRLPLPMDISKIRDAVYLQLT 373
           F ++ +HL   S  +  LP+   +I+  VY Q+T
Sbjct: 359 FIKKARHLIQVSRDKYKLPISTEEIKPVVYSQVT 392


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 89  AHSPPGVKCLLEPIDIYNVNAATYLE 12
           A  PP +K    P+DI N++AA  L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,223
Number of Sequences: 5004
Number of extensions: 46415
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)