Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30202
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774...    29   4.5  
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763...    28   5.9  

>06_01_0996 +
           7746358-7746493,7747102-7747262,7747586-7747647,
           7748142-7748595,7748994-7749134,7749444-7749633,
           7749842-7750530,7750605-7750804,7751210-7751375,
           7751850-7752046,7752162-7752396
          Length = 876

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 465 DKFQKINVEFVCYVQWNKN*TVCGFFKMSIIILW 364
           D+F  ++  + C+V  NKN   CGF+ +  + LW
Sbjct: 794 DRFY-MSQTYPCFVFANKNSRDCGFYMLKFVELW 826


>06_01_0983 -
           7630651-7630683,7630717-7630942,7630993-7631234,
           7631502-7631591,7631680-7631845,7632225-7633191,
           7633402-7633591,7633908-7634048,7634416-7634736
          Length = 791

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 438 FVCYVQWNKN*TVCGFFKMSIIILW 364
           + C+V  NKN   CGF+ +  + LW
Sbjct: 709 YPCFVFANKNSRDCGFYMLKFVELW 733


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,162,885
Number of Sequences: 37544
Number of extensions: 263075
Number of successful extensions: 512
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)