Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30202
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14084| Best HMM Match : DUF1531 (HMM E-Value=0.11)                  28   7.9  
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_14084| Best HMM Match : DUF1531 (HMM E-Value=0.11)
          Length = 413

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 238 LFINSDKARQQSLSNIKRKLLDKQR 312
           L   S  + QQSL+NI RKL DK+R
Sbjct: 191 LLTTSPASVQQSLNNILRKLQDKRR 215


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 420 IEHNIQIRHLFSEIYLKLASRSRFASETVIRLLLIFPLFNGCY*SETS 563
           ++HN+Q++ L +   + L     F S  V R+LL   + N C+ S TS
Sbjct: 201 VDHNVQLKFLMTNFRVVLDKTLLFVS--VKRILLEIIVRNACHCSTTS 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,899,006
Number of Sequences: 59808
Number of extensions: 320308
Number of successful extensions: 665
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)