Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30202
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    33   0.24 
AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ...    33   0.24 
Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF003145-7|AAB57714.2|  352|Caenorhabditis elegans Serpentine re...    28   6.9  

>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 15  PTSAGWLNSMLVFHHISPLPPLLHYHLISHNFNHLRL 125
           P     +NS L+F H+ PLP  L    + H  N LRL
Sbjct: 308 PFPVDTVNSQLIFQHLHPLPEDLDDSSVQHLINRLRL 344


>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
           protein K10E9.1 protein.
          Length = 1451

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 426 HNIQIRHLFSEIYLKLASRSRFASETVIRLLL 521
           HN+   H+  EIYL+L  +S F ++ ++R LL
Sbjct: 564 HNVHFDHINVEIYLELLKKSPFFAQNIVRHLL 595


>Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical
           protein H12I19.1 protein.
          Length = 327

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 516 LLIFPLFNGCY*SETSLSALEKKYRHIFSVTRHFFSVTRHLFITYI 653
           +L+FP +   Y ++ +      K   +F +T HFF +T++ FI YI
Sbjct: 39  ILVFPFY--VYVNKVNKE--RDKNAFVFPITNHFFEMTKNAFIGYI 80


>AF003145-7|AAB57714.2|  352|Caenorhabditis elegans Serpentine
           receptor, class z protein4 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 504 VIRLLLIFPLFNGCY*SETSLSALEKKYRHIFSVTRHFFSV 626
           +I +++IFPL+   Y     L+   +K  + + +T+HF+SV
Sbjct: 29  LISIIVIFPLYVYVY----RLNRKTEKLAYFYPITKHFYSV 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,057,806
Number of Sequences: 27780
Number of extensions: 271887
Number of successful extensions: 635
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)