Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30202
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04270.1 68418.m00419 zinc finger (DHHC type) family protein ...    32   0.30 
At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) simil...    29   3.7  
At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase, pu...    29   3.7  
At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing p...    27   8.6  

>At5g04270.1 68418.m00419 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 284

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = -1

Query: 502 VSEAKR-ERLASFR*ISENKCRICMLCSME*KLNCLWIL*NV-YNNTMAL*IFK-WANTK 332
           V+E ++ ++  +++ +  + CR+C  C ++   +CLWI   V Y N  A  I   +A   
Sbjct: 101 VTETRKCDKCFAYKPLRTHHCRVCRRCVLKMDHHCLWINNCVGYANYKAFFILVFYATVA 160

Query: 331 QLSTTLFFVCLA 296
            + +T+  VC A
Sbjct: 161 SIYSTVLLVCCA 172


>At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 559

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 477 SRSRFASETVIRLLLIFPLFNGCY*SETSLSALEKKYRHIFSVTRHF 617
           S +RF   TV  LL+I  L  G + +    SAL  K  H  S  +HF
Sbjct: 6   SSNRFGYLTVTFLLVISCLLLGFFTNPVDSSALRPKSEHDCSALKHF 52


>At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase TCH4 GI:886116 from
           [Arabidopsis thaliana]
          Length = 305

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 668 FFILNYIRDKQMARNGKKVTCNRKN 594
           F + NY +DK+   NG  V C  KN
Sbjct: 276 FMVYNYCKDKKRFSNGLPVECTAKN 300


>At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing
           protein similar to brahma associated protein 60 kDa
           [Drosophila melanogaster] GI:3378134, SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin D1 [Homo sapiens] GI:4566530; contains Pfam
           profile PF02201: BAF60b domain of the SWIB complex
          Length = 534

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 39  SMLVFHHISPLPPLLHYHLISHNFNHLRLFNCHPMVV 149
           S  + HH+SP PP+   H I  + N+  +  C+ ++V
Sbjct: 382 SQKISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLV 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,892,450
Number of Sequences: 28952
Number of extensions: 238558
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)