Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30199
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0908 - 21476700-21476945,21477638-21477935,21478078-214783...    28   5.4  
07_03_1382 - 26170563-26170631,26171151-26171843                       27   9.5  

>10_08_0908 -
           21476700-21476945,21477638-21477935,21478078-21478325,
           21479319-21479573
          Length = 348

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 511 IHLRSVCGLPANKEATWVSLNSFSNI*LINSGPS-EILN 624
           + +  V GL  NK+  W S+N+ +   ++N G + EIL+
Sbjct: 232 LQVNDVQGLQINKDGKWFSVNALNGALIVNIGDTLEILS 270


>07_03_1382 - 26170563-26170631,26171151-26171843
          Length = 253

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 486 WYHGRLDRYTSEERLWAASKQGSYLG 563
           WYH  ++ +  +ER + A+K  + LG
Sbjct: 158 WYHAGMEAFFDDERQYEAAKAAAQLG 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,700,226
Number of Sequences: 37544
Number of extensions: 266700
Number of successful extensions: 479
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)