Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30199
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41533| Best HMM Match : SH2 (HMM E-Value=6.3e-25)                   46   2e-05
SB_35674| Best HMM Match : SH2 (HMM E-Value=0)                         29   2.4  
SB_8598| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_44791| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   9.7  

>SB_41533| Best HMM Match : SH2 (HMM E-Value=6.3e-25)
          Length = 389

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = +3

Query: 468 APPETEWYHGRLDRYTSEERLWAASKQGSYL 560
           APP+  WYHG+LDR T EERL A  + G+YL
Sbjct: 48  APPDDRWYHGKLDRKTCEERLAADGRIGAYL 78


>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
          Length = 871

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 435 PSTNGERQAVLAPPETEWYHGRLDRYTSEERLWAASKQGSYL 560
           P+  G   +V  P  T W+H  +  + +E  L      GSYL
Sbjct: 463 PAAGGATISVKPPVPTTWFHSNVSGHDAERLLIERGLHGSYL 504


>SB_8598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 294 PFLRQTKNHIQNQFSNSRISFTHTSDSLFRNGIFFLFTRKINLV 163
           PF  Q K H+    SNS   FT  +D++F +  + +FT   + V
Sbjct: 15  PFWHQRKGHVFT--SNSDAVFTINTDAVFTSNTYAVFTSNSDAV 56


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -1

Query: 246  SRISFTHTSDSLFRNGIFFLFTRKINLVVQT*RIPKIKIYSVLFRSSL 103
            SRI+   TS +L + G F  + R++N + Q  R P+I +  V FR  +
Sbjct: 2109 SRITKYKTSIALLKRGGFEKWERRLNKITQCSRKPEI-LTGVTFRGGI 2155


>SB_44791| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 415

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 609 RSTINELYITERIKTYPSSFLVCWQP 532
           +S I EL  T+ +     SF+VCW P
Sbjct: 259 KSIIRELKATKTLAIVVGSFIVCWLP 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,129,286
Number of Sequences: 59808
Number of extensions: 318395
Number of successful extensions: 850
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)