Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30199
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-6|CAA86666.1|  503|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U39472-9|AAK31390.2|  327|Caenorhabditis elegans Serpentine rece...    27   8.6  
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z46676-6|CAA86666.1|  503|Caenorhabditis elegans Hypothetical
           protein C08B11.8 protein.
          Length = 503

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 189 LFTRKINLVVQT*RIPKIKIYSVLFRSSLNLSLSYFRAYYI 67
           L +   +LV+    I  I I+S+  + +  LSLS+F AY++
Sbjct: 393 LISEYTSLVIWFLNITNISIFSLCVKDNFALSLSFFFAYFV 433


>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical protein
            T08A11.1 protein.
          Length = 1872

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 609  RSTINELYITERIKTYPSSFLVCWQPTD 526
            ++  +++  TE +K + +SFLV + PTD
Sbjct: 1383 KNIFSDILYTESMKCFSASFLVVFHPTD 1410


>U39472-9|AAK31390.2|  327|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 33 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 385 VTLPNWQLN*S*TKQTDQALMVSVKPCWPRRRLNGTTAV*T 507
           + L NW L  S   QT   +M   + CWP    N  T V T
Sbjct: 72  IFLQNWSLFRSFFYQTANDIMFKSEECWPHHVTNEFTKVVT 112


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
            protein T08A11.1 protein.
          Length = 1872

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 609  RSTINELYITERIKTYPSSFLVCWQPTD 526
            ++  +++  TE +K + +SFLV + PTD
Sbjct: 1383 KNIFSDILYTESMKCFSASFLVVFHPTD 1410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,076,005
Number of Sequences: 27780
Number of extensions: 255707
Number of successful extensions: 542
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)