Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30198
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 76 3e-15
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 62 8e-11
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 54 2e-08
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 52 6e-08
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 38 8e-04
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 32 0.070
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 31 0.16
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 6.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 8.1
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 8.1
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 76.2 bits (179), Expect = 3e-15
Identities = 34/96 (35%), Positives = 58/96 (60%)
Frame = +2
Query: 131 YIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 310
++ G+++ S E+ NPAT E+IG+V + + +E A+ AA A+KT+ T + R
Sbjct: 21 FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHVQRS 80
Query: 311 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 418
QL+ ++A L+ EN+ L +T E GK ++ AE +V
Sbjct: 81 QLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEV 116
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 61.7 bits (143), Expect = 8e-11
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Frame = +2
Query: 128 LYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTR 307
LYI+G++ S T W E +P+ EVI +V A + E+ A+ +AK A+KTW K +
Sbjct: 23 LYINGEWHKSAET-W-ETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKTWKKVPGSEK 80
Query: 308 QQLMFKFARLLRENQSKLAAKITEEQGK-TIADAEGDVLRGIQSVEHC 448
+L+ K A L ++ LAA + GK +++A GDV I + +C
Sbjct: 81 GELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYC 128
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 53.6 bits (123), Expect = 2e-08
Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Frame = +2
Query: 128 LYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT---WSKSTV 298
L+I+ Q+VDS +++ +P+T ++I V +A ++++ A+ A+ A++T W K +
Sbjct: 25 LFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSS 84
Query: 299 LTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 418
R + + + A + +N LA+ T + GK+I A GDV
Sbjct: 85 AQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDV 124
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 52.0 bits (119), Expect = 6e-08
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Frame = +2
Query: 113 APTTKLYIDGQYVD--SRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT-- 280
AP L+IDG++V I L NPAT E+IG A+ ++ SA++ A +++
Sbjct: 18 APENSLFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI 77
Query: 281 WSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 418
W+K R ++ K A+++RE + LA T GK A D+
Sbjct: 78 WAKWPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDI 123
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 38.3 bits (85), Expect = 8e-04
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 188 PATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAA 367
P ++G V + ++ ++ A+ A K W ++ R+ + + NQ K A
Sbjct: 10 PGDGSLLGEVKLFNKSDIDQSIILAEEAQKEWKSTSFAERRNFLKALKENIIRNQDKYAE 69
Query: 368 KITEEQGKTIADAE-GDVLRGIQSV 439
++ GKT+ DA G++L ++ +
Sbjct: 70 IACKDTGKTLVDAAFGEILVTLEKI 94
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 31.9 bits (69), Expect = 0.070
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 182 TNPATNEVIG---RVPEATQDELTSALDAAKRAYKTWSKSTVLTR 307
T+ TNE++ ++ E +D L +L A+K YK WS+ L R
Sbjct: 5 TDMETNEILDQLDKIDERNEDILLKSLKASKCTYKPWSREEFLRR 49
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 30.7 bits (66), Expect = 0.16
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 146 YVDSRTTNWIELTNPATNEVIGRV-PEATQDELTSALDAAKRAY 274
Y +RT W+EL NPA EV G + E + E T+++ A RA+
Sbjct: 498 YEPARTGEWMELLNPA--EVFGNIMVEYSYPECTTSVILALRAF 539
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3
Query: 254 PRRKSIHPELPLAP 213
PR++ + PELPLAP
Sbjct: 760 PRKRRVLPELPLAP 773
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 8.1
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = -2
Query: 174 IQLVVLESTYCPSIYSFVVG 115
I++V+++ TY ++Y +V+G
Sbjct: 1206 IEVVIIDQTYFINVYKYVIG 1225
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 68 KSESQLVLRRSYSSSAPTTKLYIDGQYVDSRTTNWI 175
KS +LR++Y P+ +YIDG + + TNW+
Sbjct: 1141 KSTLVELLRKTY----PSEDIYIDGYPLTNIDTNWL 1172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,690
Number of Sequences: 5004
Number of extensions: 42825
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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