Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30198
         (583 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-5|CAJ14156.1|  227|Anopheles gambiae predicted protein ...    25   1.4  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   2.4  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    25   2.4  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   5.5  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    23   9.5  

>CR954257-5|CAJ14156.1|  227|Anopheles gambiae predicted protein
           protein.
          Length = 227

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 228 VASGTLPITSLVAGLVSSIQLVVLESTYCPSI 133
           +AS + P+ + +AG V+ +QL++L     PS+
Sbjct: 1   MASFSSPLVATIAGTVAIVQLLLLTVLLHPSV 32


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 12/55 (21%), Positives = 22/55 (40%)
 Frame = +2

Query: 140 GQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLT 304
           GQY++ R   W  +   A    +     +TQ++  +     KR +      T+ T
Sbjct: 547 GQYIEVRNKKWSGIVETALGGCLSAFFVSTQEDWRTLDALLKREFPDLQNRTIFT 601


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +2

Query: 116 PTTKLYIDGQYVDS---RTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT 280
           P  K  ID  +V      TT W  L +   ++ IG +    +++  S  D AK+ +KT
Sbjct: 169 PERKSAIDLTFVSQSLMETTGWEVLPDYMNSDHIGILITIGKEQTPSPRDNAKKGWKT 226


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +2

Query: 215 VPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAAKIT 376
           + EATQ     A       Y  W K  +   +Q+   F  +L E+  KL   IT
Sbjct: 463 IREATQYTRNGAAPGPDFVYNFWYKKLITIHEQIAACFNTVL-EDSRKLPKFIT 515


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 472 RRQHPKHRQRHGH 510
           ++QHP H Q H H
Sbjct: 174 QQQHPGHSQHHHH 186


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,707
Number of Sequences: 2352
Number of extensions: 10659
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55506924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)