Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30198
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   6.7  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   6.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.9  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 186 LVSSIQLVVLESTYCPSIYSFVVGAELLYERRSTSWDS 73
           ++S+   V L ++   SIYSF+    L++   S  W S
Sbjct: 461 ILSAAYNVELHNSSPFSIYSFLERLNLIFMSSSLQWSS 498


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 186 LVSSIQLVVLESTYCPSIYSFVVGAELLYERRSTSWDS 73
           ++S+   V L ++   SIYSF+    L++   S  W S
Sbjct: 499 ILSAAYNVELHNSSPFSIYSFLERLNLIFMSSSLQWSS 536


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 358 IGG*NH*RARENYSRC*GRC 417
           +GG     + E +SRC GRC
Sbjct: 31  LGGRGKCPSNEIFSRCDGRC 50


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 358 IGG*NH*RARENYSRC*GRC 417
           +GG     + E +SRC GRC
Sbjct: 31  LGGRGKCPSNEIFSRCDGRC 50


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 5/8 (62%), Positives = 5/8 (62%)
 Frame = -3

Query: 503 CLWRCFGC 480
           C W CF C
Sbjct: 605 CCWHCFNC 612


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -2

Query: 201 SLVAGLVSSIQLVVLESTYCPSIYSFVVGAELLYERRSTSWDS 73
           S +AG    + + V      PS+ S V    +     S SWD+
Sbjct: 399 SALAGKSEYVDITVTTDASVPSLVSNVRITSVKSSELSISWDA 441


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 575 HHREIEGLQHLQQLQ 531
           HH + + LQHL   Q
Sbjct: 354 HHHQTQSLQHLHYRQ 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,702
Number of Sequences: 438
Number of extensions: 3153
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)