Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30198
(583 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydrogena... 144 5e-35
At2g24270.2 68415.m02900 NADP-dependent glyceraldehyde-3-phospha... 72 2e-13
At2g24270.1 68415.m02899 NADP-dependent glyceraldehyde-3-phospha... 72 2e-13
At1g79440.1 68414.m09258 succinate-semialdehyde dehydrogenase (S... 72 2e-13
At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putativ... 61 6e-10
At3g48170.1 68416.m05254 betaine-aldehyde dehydrogenase, putativ... 59 2e-09
At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identic... 59 2e-09
At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial (... 58 4e-09
At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identica... 56 1e-08
At1g54100.2 68414.m06167 aldehyde dehydrogenase, putative / anti... 48 5e-06
At1g54100.1 68414.m06166 aldehyde dehydrogenase, putative / anti... 48 5e-06
At3g66658.2 68416.m00781 betaine-aldehyde dehydrogenase, putativ... 47 8e-06
At3g66658.1 68416.m00782 betaine-aldehyde dehydrogenase, putativ... 47 8e-06
At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family pr... 30 0.98
At4g39560.2 68417.m05594 kelch repeat-containing F-box family pr... 30 1.3
At4g39560.1 68417.m05593 kelch repeat-containing F-box family pr... 30 1.3
At1g02010.1 68414.m00119 cytokinesis-related Sec1 protein, putat... 29 2.3
At4g19330.1 68417.m02848 kelch repeat-containing F-box family pr... 28 4.0
At3g25750.1 68416.m03206 F-box family protein contains F-box dom... 28 4.0
At1g54160.1 68414.m06174 CCAAT-binding transcription factor (CBF... 28 5.2
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 27 9.1
At4g19250.1 68417.m02839 kelch repeat-containing protein contain... 27 9.1
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote... 27 9.1
>At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydrogenase,
putative similar to methylmalonate-semialdehyde
dehydrogenase [acylating], mitochondrial precursor
(MMSDH) [Rattus norvegicus] SWISS-PROT:Q02253
Length = 607
Score = 144 bits (348), Expect = 5e-35
Identities = 62/155 (40%), Positives = 99/155 (63%)
Frame = +2
Query: 116 PTTKLYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKST 295
P I G +V+S+++++I++ NPAT EV+ +VP T +E +A+ AAK+A+ W +
Sbjct: 112 PRVPNLIGGSFVESQSSSFIDVINPATQEVVSKVPLTTNEEFKAAVSAAKQAFPLWRNTP 171
Query: 296 VLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLG 475
+ TRQ++M KF L+R+N KLA IT EQGKT+ D+ GD+ RG++ VEH C + +LQ+G
Sbjct: 172 ITTRQRVMLKFQELIRKNMDKLAMNITTEQGKTLKDSHGDIFRGLEVVEHACGMATLQMG 231
Query: 476 DSIQNIAKDMDTHSYKVPLXXXXXXAALQFPGDDP 580
+ + N++ +DT+S + PL FP P
Sbjct: 232 EYLPNVSNGVDTYSIREPLGVCAGICPFNFPAMIP 266
>At2g24270.2 68415.m02900 NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase, putative similar to NADP-dependent
glyceraldehyde-3-phosphate dehydrogenase
(NON-phosphorylating glyceraldehyde 3-phosphate;
glyceraldehyde-3-phosphate dehydrogenase [NADP+])
[Nicotiana plumbaginifolia] SWISS-PROT:P93338
Length = 496
Score = 72.1 bits (169), Expect = 2e-13
Identities = 32/108 (29%), Positives = 63/108 (58%)
Frame = +2
Query: 125 KLYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLT 304
K Y DG++ S + + + NPAT + +V TQ+E+ + ++ AK A K+W+K+ +
Sbjct: 17 KYYADGEWKTSSSGKSVAIMNPATRKTQYKVQACTQEEVNAVMELAKSAQKSWAKTPLWK 76
Query: 305 RQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHC 448
R +L+ K A +L++N++ +A + +E K D+ +V+R + +C
Sbjct: 77 RAELLHKAAAILKDNKAPMAESLVKEIAKPAKDSVTEVVRSGDLISYC 124
>At2g24270.1 68415.m02899 NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase, putative similar to NADP-dependent
glyceraldehyde-3-phosphate dehydrogenase
(NON-phosphorylating glyceraldehyde 3-phosphate;
glyceraldehyde-3-phosphate dehydrogenase [NADP+])
[Nicotiana plumbaginifolia] SWISS-PROT:P93338
Length = 496
Score = 72.1 bits (169), Expect = 2e-13
Identities = 32/108 (29%), Positives = 63/108 (58%)
Frame = +2
Query: 125 KLYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLT 304
K Y DG++ S + + + NPAT + +V TQ+E+ + ++ AK A K+W+K+ +
Sbjct: 17 KYYADGEWKTSSSGKSVAIMNPATRKTQYKVQACTQEEVNAVMELAKSAQKSWAKTPLWK 76
Query: 305 RQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHC 448
R +L+ K A +L++N++ +A + +E K D+ +V+R + +C
Sbjct: 77 RAELLHKAAAILKDNKAPMAESLVKEIAKPAKDSVTEVVRSGDLISYC 124
>At1g79440.1 68414.m09258 succinate-semialdehyde dehydrogenase
(SSADH1) similar to succinate-semialdehyde dehydrogenase
[NADP+] (SSDH) [Escherichia coli] SWISS-PROT:P25526;
identical to succinic semialdehyde dehydrogenase mRNA,
nuclear gene encoding mitochondrial protein GI:6684441;
contains TIGRfam profile TIGR01780:succinic semialdehyde
dehydrogenase; contains Pfam profile PF00171: aldehyde
dehydrogenase (NAD) family protein
Length = 528
Score = 72.1 bits (169), Expect = 2e-13
Identities = 47/177 (26%), Positives = 82/177 (46%)
Frame = +2
Query: 38 IMASAILKLLKSESQLVLRRSYSSSAPTTKLYIDGQYVDSRTTNWIELTNPATNEVIGRV 217
++ S+ + + ++Q V + SS T+ I G+++DS I++ NPAT E+I V
Sbjct: 25 LLVSSQCRQMSMDAQSVSEKLRSSGLLRTQGLIGGKWLDSYDNKTIKVNNPATGEIIADV 84
Query: 218 PEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTI 397
E A+ ++ A+ +WS+ T R +++ ++ LL ++ +L IT EQGK +
Sbjct: 85 ACMGTKETNDAIASSYEAFTSWSRLTAGERSKVLRRWYDLLIAHKEELGQLITLEQGKPL 144
Query: 398 ADAEGDVLRGIQSVEHCCSITSLQLGDSIQNIAKDMDTHSYKVPLXXXXXXAALQFP 568
+A G+V G +E+ GD I D K P+ FP
Sbjct: 145 KEAIGEVAYGASFIEYYAEEAKRVYGDIIPPNLSDRRLLVLKQPVGVVGAITPWNFP 201
>At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putative
identical to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Arabidopsis thaliana]
SWISS-PROT:Q9S795; strong similarity to betaine aldehyde
dehydrogenase [Amaranthus hypochondriacus] GI:2388710
Length = 501
Score = 60.9 bits (141), Expect = 6e-10
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Frame = +2
Query: 116 PTTKLYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAY-----KT 280
PT +L+IDG++ + I + NPAT EVIG +P AT +++ A++AA+RA K
Sbjct: 6 PTRQLFIDGEWREPILKKRIPIVNPATEEVIGDIPAATTEDVDVAVNAARRALSRNKGKD 65
Query: 281 WSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 418
W+K+ R + + A + E ++ LA + GK + +A D+
Sbjct: 66 WAKAPGAVRAKYLRAIAAKVNERKTDLAKLEALDCGKPLDEAVWDM 111
>At3g48170.1 68416.m05254 betaine-aldehyde dehydrogenase, putative
similar to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Arabidopsis thaliana]
SWISS-PROT:Q9S795
Length = 503
Score = 59.3 bits (137), Expect = 2e-09
Identities = 31/108 (28%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Frame = +2
Query: 110 SAPTTKLYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAY----- 274
+ P +L+I GQ+ + + + NPAT ++IG +P AT +++ A++AA++A+
Sbjct: 4 TVPRRQLFIGGQWTEPVLRKTLPVVNPATEDIIGYIPAATSEDVELAVEAARKAFTRNNG 63
Query: 275 KTWSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 418
K W+++T R + + A + E +S+LA + GK + +A D+
Sbjct: 64 KDWARATGAVRAKYLRAIAAKVIERKSELANLEAIDCGKPLDEAAWDM 111
>At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identical
to aldehyde dehydrogenase ALDH1a [Arabidopsis thaliana]
gi|20530143|gb|AAM27004
Length = 501
Score = 59.3 bits (137), Expect = 2e-09
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Frame = +2
Query: 122 TKLYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYK--TWSKST 295
TKL+I+GQ++D+ + E +P EVI + E ++++ A++AA+ A+ W + T
Sbjct: 20 TKLFINGQFIDAASGKTFETIDPRNGEVIATIAEGDKEDVDLAVNAARYAFDHGPWPRMT 79
Query: 296 VLTRQQLMFKFARLLRENQSKLAAKITEEQGK 391
R +L+ KFA L+ EN +LA + GK
Sbjct: 80 GFERAKLINKFADLIEENIEELAKLDAVDGGK 111
>At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial
(ALDH3) nearly identical to mitochondrial aldehyde
dehydrogenase ALDH3 [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; contains Pfam profile PF00171:
aldehyde dehydrogenase (NAD) family protein
Length = 534
Score = 58.0 bits (134), Expect = 4e-09
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Frame = +2
Query: 122 TKLYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYK--TWSKST 295
T+L I G++VD+ + +P EVI +V E +++ A+ AA++A+ W K T
Sbjct: 54 TQLLIGGRFVDAVSGKTFPTLDPRNGEVIAQVSEGDAEDVNRAVAAARKAFDEGPWPKMT 113
Query: 296 VLTRQQLMFKFARLLRENQSKLAAKITEEQGK 391
R +++F+FA L+ ++ ++AA T + GK
Sbjct: 114 AYERSKILFRFADLIEKHNDEIAALETWDNGK 145
>At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identical
to aldehyde dehydrogenase [Arabidopsis thaliana]
GI:8574427; similar to mitochondrial aldehyde
dehydrogenase [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; identical to cDNA aldehyde
dehydrogenase AtALDH2a GI:20530140
Length = 538
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +2
Query: 122 TKLYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYK--TWSKST 295
T+L I+G +VDS + +P T EVI V E +++ A+ AA+ A+ W K +
Sbjct: 58 TQLLINGNFVDSASGKTFPTLDPRTGEVIAHVAEGDAEDINRAVKAARTAFDEGPWPKMS 117
Query: 296 VLTRQQLMFKFARLLRENQSKLAAKITEEQGK 391
R +++ +FA L+ ++ +LA+ T + GK
Sbjct: 118 AYERSRVLLRFADLVEKHSEELASLETWDNGK 149
>At1g54100.2 68414.m06167 aldehyde dehydrogenase, putative /
antiquitin, putative strong similarity to SP|Q41247
Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3)
(Antiquitin 1) (Brassica
turgor-responsive/drought-induced gene 26 protein)
(Btg-26) {Brassica napus}; similar to turgor-responsive
protein 26G (aldehyde dehydrogenase family 7 member A1)
[Pisum sativum] SWISS-PROT:P25795
Length = 508
Score = 48.0 bits (109), Expect = 5e-06
Identities = 29/104 (27%), Positives = 48/104 (46%)
Frame = +2
Query: 173 IELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQ 352
+ NPA N+ I +V EA+ ++ L A + A K W + T R ++ + LR
Sbjct: 36 VSTLNPANNQPIAQVVEASLEDYEQGLKACEEAAKIWMQVTAPKRGDIVRQIGDALRSKL 95
Query: 353 SKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSI 484
L ++ E GK +A+ G+V I + + S QL S+
Sbjct: 96 DYLGRLLSLEMGKILAEGIGEVQEVIDMCDFAVGL-SRQLNGSV 138
>At1g54100.1 68414.m06166 aldehyde dehydrogenase, putative /
antiquitin, putative strong similarity to SP|Q41247
Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3)
(Antiquitin 1) (Brassica
turgor-responsive/drought-induced gene 26 protein)
(Btg-26) {Brassica napus}; similar to turgor-responsive
protein 26G (aldehyde dehydrogenase family 7 member A1)
[Pisum sativum] SWISS-PROT:P25795
Length = 508
Score = 48.0 bits (109), Expect = 5e-06
Identities = 29/104 (27%), Positives = 48/104 (46%)
Frame = +2
Query: 173 IELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQ 352
+ NPA N+ I +V EA+ ++ L A + A K W + T R ++ + LR
Sbjct: 36 VSTLNPANNQPIAQVVEASLEDYEQGLKACEEAAKIWMQVTAPKRGDIVRQIGDALRSKL 95
Query: 353 SKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSI 484
L ++ E GK +A+ G+V I + + S QL S+
Sbjct: 96 DYLGRLLSLEMGKILAEGIGEVQEVIDMCDFAVGL-SRQLNGSV 138
>At3g66658.2 68416.m00781 betaine-aldehyde dehydrogenase, putative
similar to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Spinacia oleracea] SWISS-PROT:P17202;
contains non-consensus splice site (GC) at intron 13
Length = 596
Score = 47.2 bits (107), Expect = 8e-06
Identities = 23/105 (21%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Frame = +2
Query: 128 LYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTR 307
+YI + ++ ++ PAT + +G P + E+ + +++A KTW++S+ R
Sbjct: 51 IYIPPRGRSQQSDKKVQCYEPATMKYLGYFPALSPTEVEERVTLSRKAQKTWAQSSFKLR 110
Query: 308 QQLMFKFARLLRENQSKLAAKITEEQGKTIADAE-GDVLRGIQSV 439
+Q + + + E+Q + + + GKT+ DA G+++ + +
Sbjct: 111 RQFLRILLKYIIEHQELICEVSSRDTGKTMVDASLGEIMTTCEKI 155
>At3g66658.1 68416.m00782 betaine-aldehyde dehydrogenase, putative
similar to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Spinacia oleracea] SWISS-PROT:P17202;
contains non-consensus splice site (GC) at intron 13
Length = 554
Score = 47.2 bits (107), Expect = 8e-06
Identities = 23/105 (21%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Frame = +2
Query: 128 LYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTR 307
+YI + ++ ++ PAT + +G P + E+ + +++A KTW++S+ R
Sbjct: 51 IYIPPRGRSQQSDKKVQCYEPATMKYLGYFPALSPTEVEERVTLSRKAQKTWAQSSFKLR 110
Query: 308 QQLMFKFARLLRENQSKLAAKITEEQGKTIADAE-GDVLRGIQSV 439
+Q + + + E+Q + + + GKT+ DA G+++ + +
Sbjct: 111 RQFLRILLKYIIEHQELICEVSSRDTGKTMVDASLGEIMTTCEKI 155
>At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 30.3 bits (65), Expect = 0.98
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Frame = +2
Query: 26 SIN*IMASAILKLLKSESQLVLRRSYSSSAPTTKLYIDGQYVDSRTTNWIELTNPATNEV 205
S+N + SA+ + S + SY + P+ + ++ + +T+ N TNE+
Sbjct: 148 SVNPDIDSAVSTKIPEHSPVSAVSSYLRTEPSLQ-FVQHDFWQPKTS--CGTINCFTNEL 204
Query: 206 IGRVPEATQDELTSA---LDAAKRAYKTWS---KSTVLTRQQLMFKFARLLRENQSK--- 358
+ T DE TSA ++R T + KS+ + + M LR+ + +
Sbjct: 205 L------TSDEKTSASLSTVCSQRVLNTLTEALKSSGVNMSETMISVQLSLRKREDREYS 258
Query: 359 LAAKITEEQGKTIADAEGD 415
+AA +E+ G +IAD EGD
Sbjct: 259 VAAFASEDNGNSIADEEGD 277
>At4g39560.2 68417.m05594 kelch repeat-containing F-box family
protein contains Pfam PF00646: F-box domain; contains
Pfam PF01344 : Kelch motif; contains Prosite PS00018:
EF-hand calcium-binding domain
Length = 266
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 77 SQLVLRRSYSSSAPTTKLYIDGQYVDSRTTNWIEL 181
+ LV R S++++ K+Y+ G DS ++NW+E+
Sbjct: 161 NMLVERNSHAANVIDGKIYVAGGSRDSNSSNWMEV 195
>At4g39560.1 68417.m05593 kelch repeat-containing F-box family
protein contains Pfam PF00646: F-box domain; contains
Pfam PF01344 : Kelch motif; contains Prosite PS00018:
EF-hand calcium-binding domain
Length = 266
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 77 SQLVLRRSYSSSAPTTKLYIDGQYVDSRTTNWIEL 181
+ LV R S++++ K+Y+ G DS ++NW+E+
Sbjct: 161 NMLVERNSHAANVIDGKIYVAGGSRDSNSSNWMEV 195
>At1g02010.1 68414.m00119 cytokinesis-related Sec1 protein, putative
similar to cytokinesis-related Sec1 protein KEULE
[Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
Pfam domain, PF00995: Sec1 family; non-consensus GC
donor splice site at exon boundary 46833
Length = 676
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -3
Query: 209 QLLH*LLGWSAQSNW*FLNLHIVHQYTALWLEQSCYMSDAVRAGIQI---LITLRSPMP 42
+LLH +LG + + + I+ + T + QSC M+D GI + L R PMP
Sbjct: 28 RLLHEMLGSTKTGDSKAWKILIMDRVTVKVMSQSCKMADITDQGISLVEELFKRREPMP 86
>At4g19330.1 68417.m02848 kelch repeat-containing F-box family
protein very low similarity to SKP1 interacting partner
6 [Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 537
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 59 KLLKSESQLVLRRSYSSSAPTTKLYIDGQYVDSRTTNWIELTNPAT 196
K K+ S +V R++ + KLY+ G +T+W E+ +P T
Sbjct: 316 KQRKAPSMMVARKNAFTCVLDGKLYVMGGCEADESTHWAEVFDPKT 361
>At3g25750.1 68416.m03206 F-box family protein contains F-box domain
Pfam:PF00646
Length = 348
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +2
Query: 275 KTWSKSTVLTRQQLMFKFARLLRENQSKLAAKIT 376
K+W + +++++L F+F R L + K+ A ++
Sbjct: 35 KSWRSAVAMSKERLQFRFERYLPTSNKKIKAHLS 68
>At1g54160.1 68414.m06174 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 308
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 284 SKSTVLTRQQL-MFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSIT 460
+K +++ QL K + L +NQ +++ TEE+ G+V + + CSI
Sbjct: 32 TKDMIMSTTQLPAMKHSGLQLQNQDSTSSQSTEEES-----GGGEVASFGEYKRYGCSIV 86
Query: 461 SLQLGDSIQNIAKDMDTHSYKV 526
+ L I+N+ K ++ ++ +
Sbjct: 87 NNNLSGYIENLGKPIENYTKSI 108
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 311 VDESKQYFCSMSYRPSWLHPRRKSIHPELPL 219
+D S F S PS+LHP R ++P P+
Sbjct: 1925 LDSSNNVFLGRSANPSFLHPNR-GLNPSNPM 1954
>At4g19250.1 68417.m02839 kelch repeat-containing protein contains
Pfam profile PF01344: Kelch motif
Length = 228
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 59 KLLKSESQLVLRRSYSSSAPTTKLYIDGQYVDSRTTNWIELTNPAT 196
K K+ S +V R + + KLY+ G +T+W E+ +P T
Sbjct: 16 KQRKAPSMMVARTNAFTCVLDGKLYVMGGCEADESTHWAEVFDPKT 61
>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 receptor type
precursor, Oryza sativa, PIR:A57676
Length = 1025
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +2
Query: 83 LVLRRSYSSSAPTTKLYIDGQYVDSRTTNWIELTN--PATNEVIGRVPEATQDELTSALD 256
+VL ++ PT KL++DG + S T + ++ T+E I R A + L
Sbjct: 926 IVLLEIFTGKRPTNKLFVDGLTLHSFTKSALQKRQALDITDETILRGAYAQHFNMVECLT 985
Query: 257 AAKRAYKTWSKSTVLTRQQLMFKFARLLRENQS 355
R + S+ + + R + ++L+ +S
Sbjct: 986 LVFRVGVSCSEESPVNRISMAEAISKLVSIRES 1018
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,788,797
Number of Sequences: 28952
Number of extensions: 227012
Number of successful extensions: 722
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -