Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30196
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0542 - 19256688-19256804,19257181-19257255,19257337-192574... 33 0.15
10_08_0613 - 19232706-19232822,19232936-19233010,19233132-192332... 32 0.46
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 31 1.1
03_02_0481 + 8789890-8789949,8790325-8790441,8790532-8790601,879... 30 1.8
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769... 29 4.2
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 28 7.4
05_01_0328 - 2571155-2571627,2571894-2572197 28 7.4
04_04_0427 + 25137036-25137119,25137687-25137826,25139775-251398... 28 7.4
02_05_0255 - 27184306-27184914,27185009-27185272 28 7.4
04_04_0981 + 29912275-29912814 27 9.8
>07_03_0542 -
19256688-19256804,19257181-19257255,19257337-19257426,
19257506-19257568,19257659-19257856,19257973-19258074,
19259276-19259424,19260136-19260205,19260460-19260582,
19261541-19261600
Length = 348
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 37 ALYDYTGAESDELSFRQGDLFEKLEDEDEQGWCKGRKDGRVGLYPANYVE 186
A++++ G ELS GD + + GW +G G G +PA YVE
Sbjct: 286 AVHNFNGTTEKELSLIVGD-YVVVRQIAPNGWAEGECKGVAGWFPAAYVE 334
>10_08_0613 -
19232706-19232822,19232936-19233010,19233132-19233287,
19233412-19233549,19233571-19233771,19233985-19234086,
19234960-19235111,19235213-19235282,19235416-19235532,
19235674-19235733
Length = 395
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 37 ALYDYTGAESDELSFRQGDLFEKLEDEDEQGWCKGRKDGRVGLYPANYVE 186
A+ Y EL+ GD + + GW +G G+ G +P +Y+E
Sbjct: 333 AIQSYRAESETELNLAAGD-YIVVRKVSNNGWAEGECRGKAGWFPYDYIE 381
>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 34 RALYDYTGAESDELSFRQGDLFEKLEDEDEQGWCKGRKDGRVG 162
+ALYD+T DELS G+ E + D + K ++ GR G
Sbjct: 1088 KALYDFTAGGDDELSLTAGEDVEIEYEVDGWYYVKKKRPGRDG 1130
>03_02_0481 +
8789890-8789949,8790325-8790441,8790532-8790601,
8790688-8790836,8791520-8791621,8791692-8791892,
8792589-8792651,8792791-8793009,8793681-8793755,
8794003-8794101,8794521-8794691
Length = 441
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 58 AESD-ELSFRQGDLFEKLEDEDEQGWCKGRKDGRVGLYPANYVE 186
A++D ELS GD + + GW +G G+ G +P+ YVE
Sbjct: 334 AQADGELSISVGD-YVVVRQVAPNGWSEGECKGKAGWFPSAYVE 376
>06_02_0032 +
10775031-10775520,10775661-10776246,10776333-10776973,
10777270-10777973
Length = 806
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 438 IINLLASRELVIKVQEDICMSSLVRATLRFVESYII 545
II LL ++LVI + +D S R RF+++YII
Sbjct: 268 IIMLLLDKQLVIPLLQDQDQSMTSRVRTRFLKAYII 303
>07_01_1005 +
8509777-8509968,8510059-8510205,8510326-8510544,
8510652-8510761,8511337-8511391,8511447-8511631,
8512537-8512599,8513713-8513782,8514159-8514242,
8515925-8516159,8516213-8516517
Length = 554
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +2
Query: 11 PASPACPCARSTTTPAQRATSSPSGRETCLRSWRMKTSRAGA 136
PAS S +P RATSSPS C S R +T+R GA
Sbjct: 486 PASTTLSPWWSPPSPHPRATSSPSTSPRC--SPRAETARQGA 525
>05_01_0328 - 2571155-2571627,2571894-2572197
Length = 258
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 86 RETCLRSWRMKTSRAGARDARTGAWGSTR 172
R + RSW ++T+R GAR A GS R
Sbjct: 6 RSSRRRSWAVQTTRKGARGAAEDVRGSAR 34
>04_04_0427 +
25137036-25137119,25137687-25137826,25139775-25139846,
25141160-25141470,25141595-25141705,25143548-25143640,
25144063-25144212,25145062-25145120,25145636-25145693,
25146351-25146622
Length = 449
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +2
Query: 29 PCARSTTTPAQRATSSPSGRETCLRSWRMKTSRA 130
P RS R S RETCL WR SRA
Sbjct: 367 PVLRSPDKGVVRYGRGDSRRETCLHVWRSLLSRA 400
>02_05_0255 - 27184306-27184914,27185009-27185272
Length = 290
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 160 PRARPCVPCTSPARLHPP 107
P A P P T+PA HPP
Sbjct: 223 PAASPAAPATTPAPAHPP 240
>04_04_0981 + 29912275-29912814
Length = 179
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 26 CPCARSTTTPAQRATSSPSG 85
CPCA S+++P+ ++S+ SG
Sbjct: 41 CPCAASSSSPSSSSSSAASG 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,043,957
Number of Sequences: 37544
Number of extensions: 254920
Number of successful extensions: 928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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