Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30196
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.6  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   4.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 414 TNTYIHEYIINLLASRELVIKVQEDICMSSLVRATLRFVESY 539
           T+TY    ++ +  +REL I++ + I   SL  + L+ V +Y
Sbjct: 268 TSTYCEPQVVIVSPTRELTIQIWQQIVKFSL-NSILKTVVAY 308


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 2   SRTPASPACPCARSTTTPAQRATSS 76
           S+TP  P CP  R   +P+     S
Sbjct: 560 SKTPQPPQCPRFRKLDSPSDSGIES 584


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 2   SRTPASPACPCARSTTTPAQRATSS 76
           S T +SP    + ++T+PA R TSS
Sbjct: 63  SPTGSSPQHSGSSASTSPAARTTSS 87


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 145 CVPCTSPARLHPPT 104
           CV C+ P R  PP+
Sbjct: 389 CVACSPPPRQTPPS 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,865
Number of Sequences: 438
Number of extensions: 3069
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)