Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30196
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01280.1 68418.m00037 expressed protein                             34   0.094
At4g34660.1 68417.m04921 SH3 domain-containing protein 2 (SH3P2)...    32   0.29 
At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)...    32   0.29 
At2g19080.1 68415.m02228 metaxin-related contains 1 transmembran...    28   4.7  
At2g07360.1 68415.m00843 SH3 domain-containing protein contains ...    28   6.2  

>At5g01280.1 68418.m00037 expressed protein
          Length = 460

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 2   SRTPAS-PACPCARSTTTPAQRATSSPSGRETCLRSWRMKTSRAGARDAR 148
           S+TPA  P+ P +R+T+T   RAT + S   +  RSW   +S +G   +R
Sbjct: 104 SKTPAKRPSTPTSRATSTTT-RATLTSSSTTSSTRSWSRPSSSSGTGTSR 152


>At4g34660.1 68417.m04921 SH3 domain-containing protein 2 (SH3P2)
           nearly identical to SH3 domain-containing protein 2
           [Arabidopsis thaliana] GI:16974678; contains Pfam
           profile PF00018: SH3 domain
          Length = 368

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 40  LYDYTGAESDELSFRQGDLFEKLEDEDEQGWCKGRKDGRVGLYPANYVE 186
           L+ Y G    ELS   G+ +  +      GW +G   G+ G +P  Y+E
Sbjct: 307 LFPYHGVTDVELSLSTGE-YVVVRKVTGSGWAEGECKGKAGWFPYGYIE 354


>At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)
           nearly identical to SH3 domain-containing protein 3
           [Arabidopsis thaliana] GI:16974680; contains Pfam
           profile PF00018: SH3 domain
          Length = 351

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 40  LYDYTGAESDELSFRQGDLFEKLEDEDEQGWCKGRKDGRVGLYPANYVE 186
           ++ ++ A   EL   +GD +  +    + GW +G   G+ G +P  Y+E
Sbjct: 289 IHPFSAASEKELDLDKGD-YIVVRKVSQTGWAEGECKGKAGWFPMAYIE 336


>At2g19080.1 68415.m02228 metaxin-related contains 1 transmembrane
           domain; similar to Metaxin 1 (component of a preprotein
           import complex) (Swiss-Prot:P47802) [Mus musculus];
          Length = 315

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 25  LPVRALYDYTGAESDELSFRQGDLFEKLEDEDEQGWCKGRKDGRVGL 165
           LP    ++ T  +SDEL + + D +    +ED     K +KDG V L
Sbjct: 40  LPFELAFNSTFPDSDELPYFESDTYVAYNNEDGGVIEKLKKDGIVNL 86


>At2g07360.1 68415.m00843 SH3 domain-containing protein contains Pfam
            profile PF00018: SH3 domain
          Length = 1196

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +1

Query: 37   ALYDYTGAESDELSFRQGDLFEKLEDEDEQGWCKGRKDGR----VGLYPANYV 183
            ALYD+T    DEL+    +  E   + D   + K ++ GR     GL P  YV
Sbjct: 1141 ALYDFTAGGDDELNLTAEEELEIEYEVDGWFYVKKKRPGRDGKMAGLVPVLYV 1193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,528,635
Number of Sequences: 28952
Number of extensions: 212904
Number of successful extensions: 553
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)