Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30195
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    25   5.8  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    25   5.8  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   5.8  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   7.7  

>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 181 SETVISLLAKRNSARFPRDGSVVGTRLTSCYDRAXLMEARGRHH 312
           S   + L ++R + +  R+G V+G +++  Y    L + + R H
Sbjct: 292 SSPFLDLQSERQNKKIMRNGLVIGKQVSQNYSSYKLKKRKFRRH 335


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 86  RVSGSWRHLRCRFPVGSGY 30
           RV  +WRH RCR  V SG+
Sbjct: 254 RVECNWRHGRCRQVVLSGH 272


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 200 KLMTVSDIYFSYTNL*CATE*RKVNWPVDFCITTPSVGRVSGSWR 66
           K  ++S+IY S  +L  A      N     C T P VGR++ +W+
Sbjct: 415 KCSSLSNIYTS--DLFFAISSSNTNEGDVVCCTAPEVGRIANAWQ 457


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 137 VTLWHIIN*YMKNICRRRSLV 199
           V LWHI N  + N  R+RS++
Sbjct: 461 VVLWHIPNKVLINASRKRSVI 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,536
Number of Sequences: 5004
Number of extensions: 38646
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)