Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30195
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0115 + 22868554-22868749,22868863-22868912,22870009-228701...    30   1.5  
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    28   5.9  
08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073           27   7.8  

>04_04_0115 +
           22868554-22868749,22868863-22868912,22870009-22870195,
           22870226-22870333,22872501-22873165
          Length = 401

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 122 PVDF-CITTPSVGRVSGSWRHLRCRFPVGSGYHLKPGGLS 6
           PVD   I T  V  V+G+   LR   PVG+  HL  GGLS
Sbjct: 247 PVDAELIPTGQVAPVTGTPCDLRAPTPVGARVHLVTGGLS 286


>02_05_0046 - 25398412-25398594,25399022-25399060,25399896-25400360,
            25400758-25400816,25400920-25401748,25402554-25402898,
            25402973-25403435,25403537-25403640,25403692-25403901,
            25404933-25405088,25405774-25406052,25406237-25406986,
            25407141-25407232,25407977-25408361,25408672-25408752,
            25409196-25409354,25409399-25409506,25409604-25409666,
            25409764-25409835,25409932-25410366
          Length = 1758

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 306  PSHLPTSLLEERCLRPKNCHSFLFANVKRRFL 401
            P+ L + L ++RC  P  C+   FAN    FL
Sbjct: 1726 PTLLQSILKQDRCKEPSKCNKRYFANPMSTFL 1757


>08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073
          Length = 900

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = +3

Query: 288 DGGAWTPSHLPTSL--LEERCLRPKNCHSFLF---ANVKRRFLNCSKTTNVIGVLNISLS 452
           D   W P  L   L  L+E C+RP   +   +   AN  R+F+   K    +G L +  +
Sbjct: 609 DHRTWAPVDLIGKLTSLQELCIRPAYAYDRFYDDKANGMRQFV---KALGRLGELRVLQT 665

Query: 453 SITLLAPTMSDDDVNNVXSL 512
            I +L  +M  D + ++ +L
Sbjct: 666 QIDILDDSMEKDLLESLDNL 685


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,762,453
Number of Sequences: 37544
Number of extensions: 266987
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)