Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30195
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68119-5|CAA92196.1|  102|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U58743-2|AAB00614.1|  298|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like ...    28   5.3  

>Z68119-5|CAA92196.1|  102|Caenorhabditis elegans Hypothetical
           protein T18D3.7 protein.
          Length = 102

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -2

Query: 499 LLTSSSDXVGA--NKVIELREILSTPITFVVLEQFRNLLLTLAN 374
           L T++S+ V A  NK+++  +++ T +TF V E+   L  T+ +
Sbjct: 24  LATATSNTVVAIDNKIVQAMDLVKTHLTFAVREEVETLRTTITD 67


>U58743-2|AAB00614.1|  298|Caenorhabditis elegans Hypothetical
           protein F39F10.2 protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 511 REXTLLTSSSDXVGANKVIELREILSTPITFVVLEQFRNLLLTLANKNE 365
           RE   LT+ SD  G  K+ E     +    ++V+EQ  + L+T+  +NE
Sbjct: 55  RETFTLTALSDVSGVTKMFEYGS--TETHNWIVMEQLSDDLITIVRRNE 101


>Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical
           protein C41G7.2 protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +1

Query: 67  RQLPDTRPTDGVVIQKSTGQLTLRYSVAHHKLVYEKYMSETVISLLAKRNS 219
           RQL   RP      Q+ST   +L+ SVA  + V +K +  + ++LL +RN+
Sbjct: 110 RQLRTGRPPPPST-QRSTATFSLKPSVARARPVAQKPILPSKVTLLEERNA 159


>AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +1

Query: 67  RQLPDTRPTDGVVIQKSTGQLTLRYSVAHHKLVYEKYMSETVISLLAKRNS 219
           RQL   RP      Q+ST   +L+ SVA  + V +K +  + ++LL +RN+
Sbjct: 110 RQLRTGRPPPPST-QRSTATFSLKPSVARARPVAQKPILPSKVTLLEERNA 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,542,236
Number of Sequences: 27780
Number of extensions: 222746
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)