Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30194
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    57   1e-09
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    45   4e-06
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    32   0.029
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    31   0.087
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    30   0.12 
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    27   0.81 
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    27   1.4  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.4  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   1.9  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    26   1.9  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    26   2.5  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   2.5  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   3.3  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   4.3  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   5.7  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    24   7.6  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    24   7.6  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   10.0 
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||...    24   10.0 

>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 56.8 bits (131), Expect = 1e-09
 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
 Frame = +3

Query: 201 SITNAYKK-PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLW 377
           +I + Y + PV+  +G   +L+D +G++Y+D   G+   S+GH HP+V     DQ   L 
Sbjct: 46  NIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQCSKLV 105

Query: 378 HTTNLY 395
           H++NL+
Sbjct: 106 HSSNLF 111


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 45.2 bits (102), Expect = 4e-06
 Identities = 22/69 (31%), Positives = 37/69 (53%)
 Frame = +3

Query: 156 SYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHP 335
           S +Q+E ++  Y   +  N +  PV  ++     ++D +G+ YLD       V+ GHCHP
Sbjct: 12  STEQIEVLENEY---AAHNYHPLPVCFSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHP 68

Query: 336 KVNAALKDQ 362
           K+  AL +Q
Sbjct: 69  KIIEALVEQ 77


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 32.3 bits (70), Expect = 0.029
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 225 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWH 380
           P ++ +     +YD      LD   G ++  +GH HP + A ++  L  L H
Sbjct: 33  PKIIVRAKGCCVYDEQDNAILDFTSGQMSAILGHSHPDITACIEKNLPKLVH 84


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 30.7 bits (66), Expect = 0.087
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +3

Query: 225 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLD 368
           P+ +  G+   L D DG  Y D    +     GH +P +  AL    D
Sbjct: 52  PIFIEAGYGSKLRDVDGHEYTDFLNELTAGIYGHSNPVIKKALMQGFD 99


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 30.3 bits (65), Expect = 0.12
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 207 TNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQ 362
           T+   +P  + +    +LY  DG R +D  GG     +GH + +V  A+  Q
Sbjct: 22  TSPNHRPPTVVRAEGVYLYLEDGTRIMDATGGAAVACLGHGNKEVIDAMHKQ 73


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 197 RHVNSFHLFYLLVRRSRVRSGHEIPSAAFWPCCTF*RCRSIILF 66
           R    F   Y L+++   R+G  +PS   W   T+ + R  + F
Sbjct: 351 RRYRGFKTLYYLLKKQSARNGRAVPSFPVWRGNTYEKFREGLYF 394


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 147  TGPSYQQVEQMKGVYMPPSITNAYKKPVLL 236
            +G SY+ V+  + VY+ PS + A KKP ++
Sbjct: 977  SGDSYRTVKSNQTVYIHPSSSVAEKKPKVI 1006


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 87  SSERTARPKCRRRDFVPRPYTGPSYQQVEQ 176
           S+ RTA P    +D+    Y+ PSY Q  Q
Sbjct: 78  STPRTASPAVGNQDYSKPSYSQPSYSQPSQ 107


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 27  SPQQRNTSKWLIEEQNYASTSSERTARPKCRRRDFVPRPYTGPSYQQVEQMKGVYMPPS 203
           SP  + ++  +IE++ Y S  +++ A      RD VP   +G +    +++KG Y+P S
Sbjct: 423 SPLSKRSAHNMIEKR-YRSNLNDKIAE----LRDAVPTLRSGYNSTTADELKGTYVPLS 476


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 343 FTFG*QWPTETVTIPPNRSRYLLPSLSYNHCMCP 242
           +T+  +W  E  + P     Y++    YN  +CP
Sbjct: 108 YTYNSRWKIEIPSYPVREIPYVVADTPYNKLLCP 141


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 264 DNDGKRYLDLFGGIVTVSVGH 326
           D  G  +LDL GG+  V+VG+
Sbjct: 85  DEKGTEHLDLIGGVGVVTVGN 105


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 50  EMANRGT--KLCFDIVRTYSTAKMPPTGF 130
           E+ANR    KLC+ I++    A +PPT F
Sbjct: 355 EIANRPRDFKLCYWILKEIGVATIPPTEF 383


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 214 PIRSRCFSPRGTCSGYTTTT 273
           P R+ C+SP G    Y T T
Sbjct: 36  PARNACYSPNGKLFAYATAT 55


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 126 DFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKP 227
           D  P P   PS Q    +    MPP +T  Y +P
Sbjct: 454 DGSPDPPAAPSIQNSLSVHESEMPPHVTRDYTQP 487


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 347 CIYFRMTMAHGDGDDSTEQIQ 285
           C+YF  T+ + +GDD    IQ
Sbjct: 48  CVYFYHTLENQEGDDERPLIQ 68


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = -2

Query: 150 PCTVWARNPVGGILAVL------YVLTMSKHNFVPLLAISMCFSVEA 28
           P  +W +   G ++++L      Y+++  KH F     I +C+++ A
Sbjct: 340 PLDIWLKGYWGRVVSILLNTILVYMVSNWKHRFPVFFPIFLCYTLNA 386


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 277 LPSLSYNHCMCPWVRSTGF 221
           LPS S N+C   W R  GF
Sbjct: 230 LPSSSQNNCKANWKRWFGF 248


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 69  QNYASTSSERTARPKCRRRDFVPRPYTGPSYQQVEQMKGVY 191
           Q + S+S   T        +F P     PS Q ++Q  G Y
Sbjct: 202 QFHQSSSVPSTPSEVAMGHNFCPMSRNDPSLQSIQQTNGFY 242


>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 265

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 95  TYSTAKMPPTGFRAQTVHGTFVPTSRTNERSLH 193
           TYS A +   G   +      VP SRTN R L+
Sbjct: 220 TYSPAYLLSDGSLERAGRNNTVPFSRTNSRFLY 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,151
Number of Sequences: 5004
Number of extensions: 37997
Number of successful extensions: 130
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)