Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30194
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-05
SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   4e-04
SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.016
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_36068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)              27   5.6  
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_56556| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.52)            26   9.8  
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)                       26   9.8  
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)                  26   9.8  
SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)                  26   9.8  
SB_7096| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.8  
SB_449| Best HMM Match : Adeno_PIX (HMM E-Value=0.8)                   26   9.8  
SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026)          26   9.8  

>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 18/46 (39%), Positives = 28/46 (60%)
 Frame = +3

Query: 258 LYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLY 395
           ++D  GKRY+D       V+ GHCHP++  AL+DQ  +L  T+  +
Sbjct: 1   MWDVTGKRYIDFLAAYSAVNQGHCHPRIVKALQDQAGILSLTSRAF 46


>SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 17/74 (22%), Positives = 37/74 (50%)
 Frame = +3

Query: 45  TSKWLIEEQNYASTSSERTARPKCRRRDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKK 224
           +++ ++ ++    T       P C   D+ P PY G S+ + +Q++  Y+ P++   YK 
Sbjct: 15  STRTVLRQRVSHDTPKSTLEMPPC---DYKPEPYKGMSFDKAKQIRQTYLNPALLAYYKD 71

Query: 225 PVLLTQGHMQWLYD 266
           P+ +     +W+ D
Sbjct: 72  PIFIWAVITKWIQD 85


>SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +3

Query: 255 WLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQL 365
           ++ D D KRY+D  G    + +GH HP+V  A+++QL
Sbjct: 43  YVTDEDDKRYVDYVGSWGPMILGHSHPEVLDAVRNQL 79


>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
 Frame = +3

Query: 117 RRRDFVPRPYTGPSYQQVEQMKGVYMPPSI-------TNAYKKPVLLTQGHMQWLYDNDG 275
           RR   + RP    S+  +++ +G+ M  S+       +   K  V   +    ++ D DG
Sbjct: 105 RRALHISRPVLVASFN-IDEYEGIDMRTSVPGPKSQSSKGMKYFVDFEKSKGNYVVDADG 163

Query: 276 KRYLDLFGGIVTVSVGHCHPKVNAALKD 359
              LD++  I ++ +G+ HP +  A++D
Sbjct: 164 NVMLDVYQQIASIPLGYNHPALLKAMQD 191


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 228  VLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPK 338
            VLLT G  Q L     KR  D    IV+V VG C+ K
Sbjct: 4068 VLLTDGQSQDLVFTAAKRLRDAGVTIVSVGVGCCYSK 4104


>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +2

Query: 146 HGTFVPTSRTNERSLHAAFNHERL*EAGASHPGAHAVVIRQRRQEIPGSVRWNRHRLRGP 325
           HG + PT  T+   L+A+     +  AG+ HP  HAV     +  +P +  W    LR P
Sbjct: 495 HGMY-PTVPTSSALLNASA--VPVPGAGSPHPHYHAVQGANGQYSVPCNCTWQPQDLRRP 551

Query: 326 LS 331
           ++
Sbjct: 552 VA 553


>SB_36068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 99  TARPKCRRRDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKK 224
           T  PK +R   VP P + P YQ+++ + G Y   ++ + Y++
Sbjct: 186 TRVPKAQRFIGVPEPKSSPGYQRLKALLG-YQKFNVLSGYQR 226


>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
          Length = 434

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +2

Query: 77  CFDIVRTYSTAKMPPTGFRAQTVHGTFVPTSRTNERSLHAAFNHERL*EAGASHP 241
           CF I  T+++   P     A T H      S T+    HA+  H  +  A  +HP
Sbjct: 11  CFCIFVTHASTTHPYIT-HASTTHPHIAHASTTHPYITHASTTHHYIVHASTTHP 64


>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1373

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 266 QRRQEIPGSVRWNRHRLRGPLSSESKCSPQR 358
           +R QE+ G V  +R  +  P +SES+C   R
Sbjct: 30  ERVQELQGVVTTDRETIDDPNTSESRCQENR 60


>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 234 LTQGHMQWLYDNDGKRY 284
           L QG+M W ++N GK Y
Sbjct: 670 LAQGNMTWCWENRGKEY 686


>SB_56556| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.52)
          Length = 245

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 375 TIHRVDL*GLHLLSDDNGPRRR*RFH-RTDPGISCR 271
           TI+RV    LH L+D   P R   FH + +P I+ +
Sbjct: 2   TINRVANIDLHALNDSGNPERNHTFHFQREPPIAAK 37


>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
          Length = 513

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 78  ASTSSERTARPKCRRRDFVPRPYTGPSYQQVEQMKGVYMPPSITN 212
           +S S  R+  PK RRR  VPR   G +  ++   K    PP  TN
Sbjct: 271 SSISRRRSDTPKKRRRISVPRRRAGSAQGRLTSKKKT--PPRRTN 313



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +3

Query: 78  ASTSSERTARPKCRRRDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQW 257
           +S S  R+  PK RRR  VPR   G +  ++   K    PP  TN  +       G+   
Sbjct: 354 SSISRRRSDTPKGRRRISVPRRRAGSAQGRLTTKKKT--PPRRTNLLEAFTAAAGGNEVE 411

Query: 258 LYDNDGKRYLDLF 296
            Y++   + +  F
Sbjct: 412 GYNHPSSQMIGFF 424


>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
          Length = 534

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 284 PGSVRWNRHRLRGPLSSESKCS 349
           P SVRW++H L  P  S   CS
Sbjct: 340 PVSVRWSKHELTTPHKSILPCS 361


>SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)
          Length = 818

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 202 QSRTP-IRSRCFSPRGTCSGYTTTTARDTWICSVES 306
           Q+R P I S   S R TC+  TTTT R T  C +ES
Sbjct: 122 QNRKPAIPSSDLSQR-TCAS-TTTTQRPTGACDIES 155


>SB_7096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 202 QSRTPIRSRCFSPRGTCSGYTTT 270
           Q+ TP R R  +PR  CSG T T
Sbjct: 369 QASTPRRGRPSTPRRRCSGTTRT 391


>SB_449| Best HMM Match : Adeno_PIX (HMM E-Value=0.8)
          Length = 217

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 266 QRRQEIPGSVRWNRHRLRGPLSSESKCSPQR 358
           +R QE+ G V  +R  +  P +SES+C   R
Sbjct: 61  ERVQELQGVVAADRETIDDPNTSESRCQEAR 91


>SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026)
          Length = 766

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 185 SLHAAFNHERL*EAGAS--HPGAHAVVIRQRRQEIPGSVRWNRHRLRGPLSSESKCSPQR 358
           S + A+   R  E G S   PG  AVV+ QR + +   +  NR  +  P+  ++ C+ QR
Sbjct: 128 SNNRAYMIRRQAELGHSCLRPGVSAVVLSQREKHLQNPIHKNR-TIDTPI--KTSCTSQR 184

Query: 359 ST 364
            T
Sbjct: 185 PT 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,980,443
Number of Sequences: 59808
Number of extensions: 340618
Number of successful extensions: 1032
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)