Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30189
         (776 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    60   6e-08
UniRef50_Q8IJZ5 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_Q03496 Cluster: Uncharacterized protein YMR259C; n=2; S...    33   8.0  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 60.1 bits (139), Expect = 6e-08
 Identities = 29/39 (74%), Positives = 31/39 (79%)
 Frame = -2

Query: 163 QTIIIIILGDPADFVVPPLRNKRPKLLYKINLKQTKEIR 47
           Q + +IIL DPADFVVP   NKRPK LYKINLKQTK IR
Sbjct: 15  QILFMIILADPADFVVPQSINKRPKHLYKINLKQTKGIR 53


>UniRef50_Q8IJZ5 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 3013

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 263  SHINSIQFIKVSNFSSMFLYDVIT*NYRL*ADFTDNYY-YN 144
            +H+N +  +K+ + S   +YD+I   Y +  D  DNYY YN
Sbjct: 1602 THLNILNRVKIKDVSRHEIYDIIDEEYNIHDDEDDNYYDYN 1642


>UniRef50_Q03496 Cluster: Uncharacterized protein YMR259C; n=2;
           Saccharomyces cerevisiae|Rep: Uncharacterized protein
           YMR259C - Saccharomyces cerevisiae (Baker's yeast)
          Length = 1420

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -1

Query: 695 HIVEGTEKDIEYQY*LEKYTKYF*NIFSRLTREKALVKFCYITI*LLLNIFKSHFKINK 519
           ++++    D +  Y +EK   +  N FS +  +          + LLLNI++ HFK N+
Sbjct: 171 YLIDALSSDFDLYYIIEKKPHFIDNSFSLMNSDLLANSVGKCIVSLLLNIYEKHFKKNE 229


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 657,180,343
Number of Sequences: 1657284
Number of extensions: 11904625
Number of successful extensions: 24786
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24783
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)