Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30189
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       31   0.18 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   1.7  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    25   9.2  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   9.2  

>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -2

Query: 328 LSKKLYFSSNCFILYLQNNDNSVILIQFNS*R*AISHRCFFMTLSRKTIVCKRTLQTIII 149
           +S + +F  N F  + Q+   S+  IQ          RCFF+T++R T + K+T   I+ 
Sbjct: 4   ISLQFFFVDNYFFFWKQSKYQSIYAIQI---------RCFFLTVNR-TPIPKQTFSLIVF 53

Query: 148 IIL 140
            IL
Sbjct: 54  YIL 56


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 432 CSLIFKTLSRQKRCFLKTEFLQCIIDITEFIY 527
           C    +T ++++R FL TE   C+++   F+Y
Sbjct: 388 CDAFLETANQEQR-FLSTEVYDCLLNFLSFVY 418


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 399 RNVTLFRACSRCSLIFKTLSRQKRCFLKTEFLQCIIDITEFI 524
           RNV  F    R  LI+KT +++    ++ +  +  +D+TE +
Sbjct: 219 RNVNGFDFIGRWDLIYKTETKEFEGVIRNKHRKDAVDVTECV 260


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 142 LGDPADFVVPPLRNKRPKLLYKINLKQTK 56
           LG P DF+ P  +   P LL +++ +Q K
Sbjct: 45  LGPPLDFIRPKEKVTLPPLLKEVSFQQKK 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,029
Number of Sequences: 5004
Number of extensions: 56207
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)