Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30189
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0898 + 6908826-6908974,6909059-6909428,6909510-6909929,691...    30   1.8  
12_01_1101 - 11602534-11603460,11615583-11615680,11615712-11616189     28   7.2  

>06_01_0898 +
           6908826-6908974,6909059-6909428,6909510-6909929,
           6910017-6910315,6910390-6910648,6910732-6911041,
           6911126-6911251,6911373-6911417,6911652-6911702,
           6912041-6912153
          Length = 713

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 243 LN*INMTELSLFCRYNIKQLLE-KYNFFDKLTLGPIVPLCRLFGALA 380
           L+ +   ELS FC    +QLL+    F ++L    ++PLCRL   LA
Sbjct: 21  LSAVEGAELSTFCPRLSRQLLQIDPRFVERLREAGLIPLCRLVEDLA 67


>12_01_1101 - 11602534-11603460,11615583-11615680,11615712-11616189
          Length = 500

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -2

Query: 211 FFMTLSRKT-IVCKRTLQTIIIIILGDPADFV-VPP 110
           F + LS  T I+C+  L ++I+++LG   DF+  PP
Sbjct: 165 FLLWLSTGTRILCRERLSSLILLVLGVGVDFINFPP 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,473,595
Number of Sequences: 37544
Number of extensions: 281515
Number of successful extensions: 476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)