Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30189
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50330| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-17)                 32   0.60 
SB_36915| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 28   9.7  

>SB_50330| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-17)
          Length = 452

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 342 PIVPLCRLFGALACALRLKRNVTLFRACSRCSLIFKTLSRQKR 470
           P + +   +GALAC LRL+  V+    C +C    + LS+ KR
Sbjct: 221 PGIIMVAAYGALACKLRLR--VSTRMRCDKCKTNLRPLSKNKR 261


>SB_36915| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 304

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 22/87 (25%), Positives = 41/87 (47%)
 Frame = +3

Query: 267 LSLFCRYNIKQLLEKYNFFDKLTLGPIVPLCRLFGALACALRLKRNVTLFRACSRCSLIF 446
           L LF  + ++  L K  F+  LTL   +  C +  A   A+  +R + LFR  +  SL+ 
Sbjct: 88  LPLFTGFLLEHSLFKSCFYYGLTLSTALLTCGVSFATIVAISCERYLALFRPFTYLSLV- 146

Query: 447 KTLSRQKRCFLKTEFLQCIIDITEFIY 527
            T+ R   C +   ++   + +  F++
Sbjct: 147 -TVPR-VGCAIAISWILSSVIVATFVF 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,326,975
Number of Sequences: 59808
Number of extensions: 369132
Number of successful extensions: 679
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)