Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30189
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51620.1 68416.m05658 expressed protein                             28   6.0  
At5g64970.1 68418.m08172 mitochondrial substrate carrier family ...    28   7.9  
At1g67570.1 68414.m07698 expressed protein                             28   7.9  

>At3g51620.1 68416.m05658 expressed protein
          Length = 755

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 610 LEKIFQKYLVYFSN*YWYSISFSVPSTMCMN 702
           LEK+  K+L YFS   W S   S+   +C++
Sbjct: 167 LEKVLYKFLDYFSKFDWDSYCISLNGPVCLS 197


>At5g64970.1 68418.m08172 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 428

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +3

Query: 288 NIKQLLEKYNFFDKLTLGPIVPLCRLFGALACA 386
           ++KQ  E+ N FD+L LGP+  L  L+GA+A A
Sbjct: 320 HMKQEGEELNAFDQLELGPMRTL--LYGAIAGA 350


>At1g67570.1 68414.m07698 expressed protein
          Length = 456

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -2

Query: 328 LSKKLYFSSNCFILYLQNNDNSVILIQFNS*R*AISHRCFFMTLSRKTIVCKRTL 164
           +S   Y     F+LYLQ N   + +  +   R  I +  FF+ LS  T V  +T+
Sbjct: 398 MSMSSYHKRQAFVLYLQMNPGGITIFGWTVDRHLI-NTIFFIELSLVTFVLGKTV 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,163,858
Number of Sequences: 28952
Number of extensions: 257712
Number of successful extensions: 473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)