Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30188
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.2  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   5.1  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    22   5.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   8.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 401 CRSLRRRLP*TTCAEP 354
           CRS++   P  TC EP
Sbjct: 82  CRSIKNECPEPTCDEP 97


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 554 SKDLTLLHIYEREHIFGKRNWLARSFIS 637
           SK   ++ + + +H FGK N   RSF S
Sbjct: 188 SKYQFVVLVLQLQHRFGKINRTMRSFFS 215


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 554 SKDLTLLHIYEREHIFGKRNWLARSFIS 637
           SK   ++ + + +H FGK N   RSF S
Sbjct: 188 SKYQFVVLVLQLQHRFGKINRTMRSFFS 215


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 441 LIRATISTCVRLSRSQ 488
           L R  I+TC+RLS  Q
Sbjct: 145 LRRIEIATCLRLSEKQ 160


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,133
Number of Sequences: 336
Number of extensions: 3429
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)