Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30188
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch...    30   0.34 
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    30   0.34 
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    29   0.78 
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc...    28   1.4  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   2.4  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   2.4  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    27   3.1  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   7.3  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   7.3  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    25   9.6  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    25   9.6  

>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
           Tim10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 224 IDHNLITRNHDKCRVSEFYDNVRTLKTVLTVD-CPWLNFESNRTLAQHM 367
           I + L+   H KC   ++Y+   T    + +D C    FE+N++L+QHM
Sbjct: 31  IFNRLVMTCHKKCISPKYYEADLTKGESVCIDRCVSKYFEANQSLSQHM 79


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
 Frame = +2

Query: 116 DHLAANSKCIPGRGQIPSQYEIPVFQFEIPYFNATYIDHNLITRNHDKCRVSEFY--DNV 289
           + + + +K I   G   S Y + +FQ + P F    +        HD C VS  Y  D  
Sbjct: 186 ERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIA 245

Query: 290 RTL-KTVLTVDCPWLNFESNRTLAQHMSFKE 379
             L + +L  D   L F      AQ  S +E
Sbjct: 246 HALDRDILERDEIVLQFPYTEAAAQEKSQEE 276


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 244 GNEIMVDVGGVEVWYFKLEHRYLVLR 167
           G+E++V   G EVW+F +E R +V R
Sbjct: 361 GSEMLVLSYGAEVWHFNVEQRSVVRR 386


>SPBC146.10 |mug57||meiotically upregulated gene
           Mug57|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 379 FLERHVLSQGPIGFKVQPRTVDG 311
           F+ERH+++  PI +  + +T+DG
Sbjct: 122 FVERHIITSSPIEWNNEYKTIDG 144


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 68   SPIYRPCFLDDYKCISDHLAANSKCIPGRGQIPS 169
            +P Y P FL+     SD +    + +P RG I S
Sbjct: 1362 TPSYTPSFLEGSPVFSDEILNRGEYMPHRGSISS 1395


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1010

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 440  FDKGNNFDLCSAFTFADLAGGLPIFHI---NPNDQRTAQWLSKDLTLLHIYEREHIFG 604
            F+  N+F+  +  T +  +G +  F +   +PND    QWL K  T + I E+  +FG
Sbjct: 837  FEVNNSFNASNVNTNSSFSGPISEFLVELFSPNDDAKQQWLPKK-TYISILEQ--LFG 891


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = +2

Query: 431 TTVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRTAQWLSKDLTLLHIYEREHIFGKR 610
           T +F  G    L   +    L G +PI   +P      + L+ D  ++H+Y +  +  K 
Sbjct: 208 TNIFSSGGGLTLSEKYKLPFL-GSVPI---DPKFGEMIENLTPDSNIVHLYSKTEMSKKF 263

Query: 611 NWLARSFISR 640
           +++   F+++
Sbjct: 264 SFITNEFLNQ 273


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 167 SQYEIPVFQFEIPYFN--ATYIDHNLITRNHDKCRVSEF 277
           S Y + + +F    F+  +T  D NL +RN DK  +  F
Sbjct: 209 SNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALIDYF 247


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 263 RVSEFYDNVRTLKTVL-TVDC 322
           R+SE Y+ +R + TVL T+DC
Sbjct: 690 RISEHYNELRNVTTVLGTLDC 710


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 81  GPASWTITNASPTTW 125
           G A W IT A+P+ W
Sbjct: 272 GDAEWNITGAAPSEW 286


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 118 PPGRELEMYPGQRADPLAVRDTGVPV 195
           PP  +   YP     PLA++  G P+
Sbjct: 407 PPQAQFSPYPAVAPSPLALQTRGAPI 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,890
Number of Sequences: 5004
Number of extensions: 54716
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)