Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30187
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    27   0.20 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   3.2  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.5  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.5  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
 Frame = +3

Query: 363 SMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGGGLETALACKY-RIAVK 539
           S+ +N   K  V  + KR    +R+  +  K Y+A + G  +    E  L+ +  + A  
Sbjct: 219 SLYQNATRK--VCGVWKRIPHDYRKRFRMEKIYVALVWG--VKDQAEFTLSGQVMKYAAL 274

Query: 540 DSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLAL 656
            ++    L E  +G + G GGT  +   TS+ T++ LA+
Sbjct: 275 ATENFSSLLEPAVGTMTGAGGTAIVSISTSVSTSVYLAI 313


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 604  VPPPPGKSPNMTSGSPNPVLESF 536
            VPPP G S   ++GS +P +  F
Sbjct: 1111 VPPPSGSSGPGSTGSKSPPVAGF 1133


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 595 PPGKSPNMTSGSPNPVLESFTAMRYL 518
           P G +PN +S SP P     +  ++L
Sbjct: 60  PSGNTPNKSSTSPYPPNHPLSGSKHL 85


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 165 LGLLERHTFGY 133
           LG++ RH FGY
Sbjct: 7   LGIMHRHCFGY 17


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 600 GTQRLPALTSIPTTLDLALTGKTV 671
           G     ALT +    ++A+TGKTV
Sbjct: 249 GLDSFMALTVMQVLKEMAMTGKTV 272


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 600 GTQRLPALTSIPTTLDLALTGKTV 671
           G     ALT +    ++A+TGKTV
Sbjct: 249 GLDSFMALTVMQVLKEMAMTGKTV 272


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 604 VPPPPGKSPNMTSGSPNPVL 545
           +PP PG SP+    S +P +
Sbjct: 230 IPPHPGLSPHPPHLSSHPAI 249


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 604 VPPPPGKSPNMTSGSPNPVL 545
           +PP PG SP+    S +P +
Sbjct: 122 IPPHPGLSPHPPHLSSHPAI 141


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 184 NLHFVCTWLAGTAYFRLCT 128
           +L F C ++  T +F LCT
Sbjct: 82  HLLFYCPFIIFTVHFLLCT 100


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,304
Number of Sequences: 336
Number of extensions: 3760
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)