Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30187
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 53 5e-08
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 29 0.87
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.0
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 2.0
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 27 3.5
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 27 3.5
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.6
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 26 6.1
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 8.1
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 8.1
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch... 25 8.1
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 25 8.1
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 8.1
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 52.8 bits (121), Expect = 5e-08
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 4/175 (2%)
Frame = +3
Query: 189 NGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISM 368
NG + TL+ P V +N++N +++ + + +E S + +I+ G F +G DI
Sbjct: 64 NGARIFTLNRPKV-LNAINVDMIDSILPKLVSLE-ESNLAKVIILKGNGRSFSSGGDIKA 121
Query: 369 ----IENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGGGLETALACKYRIAV 536
I++ K E + ++ + + + +KP +A + G +GGG A+ +RIA
Sbjct: 122 AALSIQDGKLPEVRHAFAQE-YRLSHTLATYQKPVVALMNGITMGGGSGLAMHVPFRIAC 180
Query: 537 KDSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLGI 701
+D T F +PE +G + L T L LT + VK + GI
Sbjct: 181 ED--TMFAMPETGIGYFTDVAASFFFSRLPGYFGTY-LGLTSQIVKGYDCLRTGI 232
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 28.7 bits (61), Expect = 0.87
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 168 HTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIE 308
+ CKL V +VT P V +LN + + +S +N +TN I+
Sbjct: 63 YDNCKLSICVPIVTTCIPYHSVENLNFNIRQNISTTLNLEKTNDSIK 109
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = -2
Query: 616 GNLCVPPPPGKSPNMTSGSPNPVLESFTAMRYLHARAVSNPP 491
G PPPP +S T P P+ S RAVSNPP
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSS---------RAVSNPP 389
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/94 (23%), Positives = 42/94 (44%)
Frame = +3
Query: 225 VKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVS 404
V+ + + Q +++ N + + A + I P G S + + T E VS
Sbjct: 534 VRGDDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTG--YSCVMHIHTAVEEVS 591
Query: 405 LSKRGHEIFRRIEQSRKPYIAAIQGSCLGGGLET 506
+K H++ + +S+KP + A +G + LET
Sbjct: 592 FAKLLHKLDKTNRKSKKPPMFATKGMKIIAELET 625
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +2
Query: 467 RNTRQLSRRWIRDCSCM*ISHCCERLQNRIWTTRSHVGTFARRWRDTEITCSHLHTYNF 643
RNT + W SC I C +QNR + +S + ++ +W D + + ++F
Sbjct: 467 RNTFSQDKAWNYLASCEEIQIICLLMQNRNISLKSQI-SYLNKWFDEMVYIYAVRLHSF 524
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 3.5
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = -2
Query: 538 FTAMRYLHARAVSNPPPRQLPCIAAIYGFRDCSILLNISCPLLDRL--TTSSFVLQFSIM 365
+TA+ +H + PPP+ LP I I R CS L + P+L +L T + VL+ M
Sbjct: 254 YTAVPTIHQILLRTPPPKPLPRIRFI---RSCSSPL--APPVLSKLEATFRAPVLEAYAM 308
Query: 364 LISAPAMKHPGLPDIM 317
++ M LP ++
Sbjct: 309 TEASHQMTTNPLPPLV 324
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 601 PPPPGKSPNMTSGSPNPVLESFTAMRYLHARAVSNPPPRQ 482
P P G S + S P SF + +L + SN P ++
Sbjct: 140 PRPSGNSSRLDRNSSRPFTSSFHSAPFLSSYGSSNDPSQE 179
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -3
Query: 633 VWR*EQVISVSLHRRAKVPT*LLVVQILFWSLSQQCDIYMQEQSLIHLLDSCLVLRQYTV 454
+WR E S S R + + +F S+S CD+Y L++L +SC++ Y V
Sbjct: 294 IWRPEYNFSTSTSLRKREALDGEDIGNVFNSISG-CDLYSLSNFLLYLENSCVI--TYDV 350
Query: 453 SVIVRF 436
S+ F
Sbjct: 351 SLDCSF 356
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 448 DCSILLNISCPLLDRLTTSSFVLQFSIMLISAPAMKHPGLPDIMTA 311
D S LLN +L+ L + ++ L P M+H + D+MTA
Sbjct: 499 DKSQLLNAYQAVLNCLQDNDLPVRIQAALALQPLMRHLEVHDVMTA 544
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 8.1
Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Frame = +3
Query: 66 NSKILSALKILRSRKELFISGVHSRKYAVPASQVHTKCKLVNGVYVVTLDSPNVK-VNSL 242
NS + L L+S + GV +R+ + + + L + V +T + +++ +N L
Sbjct: 384 NSTVYQELLNLKSNNSS-VDGVKTRRQLLEENAL-----LSHKVLKLTEEIQDLETLNQL 437
Query: 243 NTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENC--KTKEEVVSLSKR 416
NT++ S +NE++ + + ++IS +P A ++ ++ C ++EE++ L+ +
Sbjct: 438 NTEIEARQSEKLNEVQEETQRLSQLLISSQP----ALTEVKHLKLCLSDSQEELLQLNAK 493
>SPBC543.08 |||phosphoinositide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 164 STYKMQIGQWSLRSHFGLSK 223
S Y + + +WS+ S+FG SK
Sbjct: 38 SIYSIYVDKWSITSYFGNSK 57
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 8.1
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -2
Query: 463 IYGFRDCSILLNISCPLL 410
IYG++D ++ + CPL+
Sbjct: 45 IYGYKDLNVTITYECPLM 62
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 610 LCVPPPPGKSPNMTSGSPNPVLESFTAMR 524
L P PP + P +T+ SPN ++ S +R
Sbjct: 240 LTPPAPPVELPPVTTTSPNAIIRSVQWIR 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,033
Number of Sequences: 5004
Number of extensions: 60677
Number of successful extensions: 224
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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