Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30187
(710 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 29 0.043
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 23 2.2
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 23 3.8
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 22 5.0
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 22 5.0
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 22 5.0
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 22 5.0
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 6.6
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 6.6
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 21 8.7
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 21 8.7
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 29.1 bits (62), Expect = 0.043
Identities = 13/61 (21%), Positives = 34/61 (55%)
Frame = +3
Query: 195 VYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIE 374
V + +L + + +NS+ + + ++++ +I TN+ + A I GKP + + S+++
Sbjct: 854 VPITSLPASSTSINSITVE-KDVINDVKTQITTNTPAKKATNIGGKPVAVVKSSAQSLLQ 912
Query: 375 N 377
+
Sbjct: 913 S 913
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.2
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +3
Query: 135 SRKYAVPASQVHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAA 314
+R++A+ A + K +L+ GV + + P ++ +EVS+ + +I N+ A
Sbjct: 133 TREHALLAFTLGVK-QLIVGVNKMDMTDPPYSEARFE-EIKKEVSSYIKKIGYNTASVAF 190
Query: 315 VIISGKPG 338
V ISG G
Sbjct: 191 VPISGWHG 198
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 3.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 368 DRKLQNKGRSCQSV*KRT*NIQKNRTITETVYCRNTRQL 484
DRK + K + + + + N N + +YC N R+L
Sbjct: 69 DRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYRKL 107
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 22.2 bits (45), Expect = 5.0
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 135 SRKYAVPASQVHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAA 314
+R++A+ A + K +L+ GV + P ++ +EVS+ + +I N A
Sbjct: 60 TREHALLAFTLGVK-QLIVGVNKMDSTEPPYSETRFE-EIKKEVSSYIKKIGYNPAAVAF 117
Query: 315 VIISGKPG 338
V ISG G
Sbjct: 118 VPISGWHG 125
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 22.2 bits (45), Expect = 5.0
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -3
Query: 558 QILFWSLSQQCDIYMQEQSLIHLLDSCLVLRQYTVSVIV 442
Q L + +Q+ D Y +++L CL T++ I+
Sbjct: 289 QRLLYVYAQESDYYPDLNEWLYILSGCLYYFSTTINPIL 327
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 22.2 bits (45), Expect = 5.0
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 135 SRKYAVPASQVHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAA 314
+R++A+ A + K +L+ GV + P ++ +EVS+ + +I N A
Sbjct: 76 TREHALLAFTLGVK-QLIVGVNKMDSTEPPYSETRFE-EIKKEVSSYIKKIGYNPAAVAF 133
Query: 315 VIISGKPG 338
V ISG G
Sbjct: 134 VPISGWHG 141
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.0
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 135 SRKYAVPASQVHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAA 314
+R++A+ A + K +L+ GV + P ++ +EVS+ + +I N A
Sbjct: 133 TREHALLAFTLGVK-QLIVGVNKMDSTEPPYSETRFE-EIKKEVSSYIKKIGYNPAAVAF 190
Query: 315 VIISGKPG 338
V ISG G
Sbjct: 191 VPISGWHG 198
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 90 KILRSRKELFISGVHSRKYAV 152
++LR RKELFI+ V Y +
Sbjct: 409 RLLRKRKELFIAIVCFVSYLI 429
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 90 KILRSRKELFISGVHSRKYAV 152
++LR RKELFI+ V Y +
Sbjct: 462 RLLRKRKELFIAIVCFVSYLI 482
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 8.7
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +2
Query: 368 DRKLQNKGRSCQSV*KRT*NIQKNRTITETVYCRNTRQL 484
DRK + K + + + + N N + +YC N ++L
Sbjct: 69 DRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKL 107
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 8.7
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +2
Query: 368 DRKLQNKGRSCQSV*KRT*NIQKNRTITETVYCRNTRQL 484
DRK + K + + + + N N + +YC N ++L
Sbjct: 69 DRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKL 107
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,290
Number of Sequences: 438
Number of extensions: 4470
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -