Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30186
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    53   3e-09
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    53   3e-09
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    52   3e-09
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    50   2e-08
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.5  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   5.5  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   7.2  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   7.2  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.6  

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score = 52.8 bits (121), Expect = 3e-09
 Identities = 25/73 (34%), Positives = 47/73 (64%)
 Frame = +3

Query: 93  MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
           M + +KTL  +T  +E++P +T++ +K KI+ ++G     D QRLI+AGK L D   ++ 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 58

Query: 273 YNIDEKKFIVIMV 311
           YNI ++  + +++
Sbjct: 59  YNIQKESTLHLVL 71


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 52.8 bits (121), Expect = 3e-09
 Identities = 25/73 (34%), Positives = 47/73 (64%)
 Frame = +3

Query: 93  MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
           M + +KTL  +T  +E++P +T++ +K KI+ ++G     D QRLI+AGK L D   ++ 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 58

Query: 273 YNIDEKKFIVIMV 311
           YNI ++  + +++
Sbjct: 59  YNIQKESTLHLVL 71



 Score = 52.8 bits (121), Expect = 3e-09
 Identities = 25/73 (34%), Positives = 47/73 (64%)
 Frame = +3

Query: 93  MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
           M + +KTL  +T  +E++P +T++ +K KI+ ++G     D QRLI+AGK L D   ++ 
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 134

Query: 273 YNIDEKKFIVIMV 311
           YNI ++  + +++
Sbjct: 135 YNIQKESTLHLVL 147



 Score = 52.8 bits (121), Expect = 3e-09
 Identities = 25/73 (34%), Positives = 47/73 (64%)
 Frame = +3

Query: 93  MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
           M + +KTL  +T  +E++P +T++ +K KI+ ++G     D QRLI+AGK L D   ++ 
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 210

Query: 273 YNIDEKKFIVIMV 311
           YNI ++  + +++
Sbjct: 211 YNIQKESTLHLVL 223



 Score = 52.8 bits (121), Expect = 3e-09
 Identities = 25/73 (34%), Positives = 47/73 (64%)
 Frame = +3

Query: 93  MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
           M + +KTL  +T  +E++P +T++ +K KI+ ++G     D QRLI+AGK L D   ++ 
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 286

Query: 273 YNIDEKKFIVIMV 311
           YNI ++  + +++
Sbjct: 287 YNIQKESTLHLVL 299



 Score = 52.8 bits (121), Expect = 3e-09
 Identities = 25/73 (34%), Positives = 47/73 (64%)
 Frame = +3

Query: 93  MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
           M + +KTL  +T  +E++P +T++ +K KI+ ++G     D QRLI+AGK L D   ++ 
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 362

Query: 273 YNIDEKKFIVIMV 311
           YNI ++  + +++
Sbjct: 363 YNIQKESTLHLVL 375



 Score = 52.8 bits (121), Expect = 3e-09
 Identities = 25/73 (34%), Positives = 47/73 (64%)
 Frame = +3

Query: 93  MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
           M + +KTL  +T  +E++P +T++ +K KI+ ++G     D QRLI+AGK L D   ++ 
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 514

Query: 273 YNIDEKKFIVIMV 311
           YNI ++  + +++
Sbjct: 515 YNIQKESTLHLVL 527



 Score = 52.8 bits (121), Expect = 3e-09
 Identities = 25/73 (34%), Positives = 47/73 (64%)
 Frame = +3

Query: 93  MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
           M + +KTL  +T  +E++P +T++ +K KI+ ++G     D QRLI+AGK L D   ++ 
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 590

Query: 273 YNIDEKKFIVIMV 311
           YNI ++  + +++
Sbjct: 591 YNIQKESTLHLVL 603



 Score = 52.8 bits (121), Expect = 3e-09
 Identities = 25/73 (34%), Positives = 47/73 (64%)
 Frame = +3

Query: 93  MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
           M + +KTL  +T  +E++P +T++ +K KI+ ++G     D QRLI+AGK L D   ++ 
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 666

Query: 273 YNIDEKKFIVIMV 311
           YNI ++  + +++
Sbjct: 667 YNIQKESTLHLVL 679



 Score = 50.4 bits (115), Expect = 1e-08
 Identities = 24/73 (32%), Positives = 46/73 (63%)
 Frame = +3

Query: 93  MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
           M + +KTL  +T  +E++P +T++ +K KI+ ++G     D QR I+AGK L D   ++ 
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRSIFAGKQLEDGRTLSD 438

Query: 273 YNIDEKKFIVIMV 311
           YNI ++  + +++
Sbjct: 439 YNIQKESTLHLVL 451


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score = 52.4 bits (120), Expect = 3e-09
 Identities = 25/66 (37%), Positives = 43/66 (65%)
 Frame = +3

Query: 93  MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
           M + +KTL  +T  +E++P +T++ +K KI+ ++G     D QRLI+AGK L D   ++ 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 58

Query: 273 YNIDEK 290
           YNI ++
Sbjct: 59  YNIQKE 64


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 24/66 (36%), Positives = 42/66 (63%)
 Frame = +3

Query: 93  MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
           M + +KTL  +T  +E++P +T++ +K KI+ ++G     D QR I+AGK L D   ++ 
Sbjct: 49  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRSIFAGKQLEDGRTLSD 106

Query: 273 YNIDEK 290
           YNI ++
Sbjct: 107 YNIQKE 112



 Score = 31.1 bits (67), Expect = 0.009
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 213 DHQRLIYAGKILLDDNKINSYNIDEKKFIVIMV 311
           D QRLI+AGK L D   ++ YNI ++  + +++
Sbjct: 11  DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 43


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 544 KLNKHYAPHLIIEKEL 591
           KL+KHY P +++ K L
Sbjct: 5   KLHKHYVPIILLSKIL 20


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 510  QSIMDMGYDRPQVEQAL 560
            +++MD GYD P + Q L
Sbjct: 2489 KAVMDAGYDVPALSQYL 2505


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/42 (23%), Positives = 17/42 (40%)
 Frame = +3

Query: 267 NSYNIDEKKFIVIMVTKPKVSESQPTSTSIPEAGESASTDSG 392
           NSY  D +   V+    P   +    +  +P+ G +   D G
Sbjct: 7   NSYMPDMRNGGVVSAEHPHQHQHYGAAVQVPQGGGAVQPDPG 48


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 479 GVGSLGNSLSFCCSRFDYF-FRRNSLRLSITTISRSTFAC 363
           G  S+G S      +F     RR ++ +S+TT + S  AC
Sbjct: 202 GPNSVGVSSEVSLPQFKVLGHRRRAVEISLTTGNYSRLAC 241


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 258 NKINSYNIDEKKFIVIMVTKPKVSESQPTSTS 353
           N+   +  +EK  +V   T P  +   P STS
Sbjct: 135 NRRMKFKKEEKNKVVTPKTSPNEASMSPQSTS 166


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 258 NKINSYNIDEKKFIVIMVTKPKVSESQPTSTS 353
           N+   +  +EK  +V   T P  +   P STS
Sbjct: 155 NRRMKFKKEEKNKVVTPKTSPNEASMSPQSTS 186


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 571 NEARNACSTCGLSY 530
           N+  N C  CG SY
Sbjct: 246 NQKPNVCRICGKSY 259


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,890
Number of Sequences: 336
Number of extensions: 2628
Number of successful extensions: 33
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)