Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30186
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 117 2e-27
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 52 8e-08
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 48 1e-06
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 48 1e-06
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 48 1e-06
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 48 1e-06
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 48 1e-06
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 46 5e-06
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 33 0.052
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 31 0.21
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 29 0.84
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch... 27 1.9
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 3.4
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 3.4
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 26 4.5
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 26 4.5
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 25 7.9
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 25 7.9
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 117 bits (281), Expect = 2e-27
Identities = 68/188 (36%), Positives = 102/188 (54%), Gaps = 13/188 (6%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M +T K LQQQ F I D K +LK +++ +++ + Q+LIY+G+IL DD +
Sbjct: 1 MNLTFKNLQQQKFVIS-DVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGE 59
Query: 273 YNIDEKKFIVIMVTKPKVSESQPTSTSIPEAGESASTDSGDXXXXXXXXXXXXXXXXXXX 452
YNI E+ FIV MV++PK S S P S + P AS
Sbjct: 60 YNIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTSTTQTVA 119
Query: 453 XRVTETPNT--TSDAELEA-----------TIQSIMDMGYDRPQVEQALRASFNNRERAV 593
P+T TS+A ++A ++++++MGY+R +VE+A+RA+FNN +RAV
Sbjct: 120 AAAPSNPDTTATSEAPIDANTLAVGAQRNVAVENMVEMGYERSEVERAMRAAFNNPDRAV 179
Query: 594 EYLITGIP 617
EYL+TGIP
Sbjct: 180 EYLLTGIP 187
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 52.0 bits (119), Expect = 8e-08
Identities = 24/64 (37%), Positives = 40/64 (62%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
ML+ +KTL + +++IDP + V +K ++E ++G QRLIYAGK + DD S
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEG--IPPSQQRLIYAGKQMADDKNAES 58
Query: 273 YNID 284
Y+++
Sbjct: 59 YHLE 62
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 134
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 135 YNIQKESTLHLVL 147
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 210
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 211 YNIQKESTLHLVL 223
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 286
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 287 YNIQKESTLHLVL 299
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 362
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 363 YNIQKESTLHLVL 375
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 46.0 bits (104), Expect = 5e-06
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = +3
Query: 99 VTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYN 278
+T+K Q + + +D E +V ALK I D + QRLIYAG++L D+ + +Y
Sbjct: 6 LTIKAANDQKYAVTVDSESSVLALKEAIAPVA--DIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 279 IDEKKFIVIMVTKPKVSESQPTSTS 353
I + I ++ T + + T+ S
Sbjct: 64 IQDGHSIHLVKTLGQNPAAAATNVS 88
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 32.7 bits (71), Expect = 0.052
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 243 ILLDDNKINSYNIDEKKFIVIMVTKPKVSESQPTSTSIPEAGESASTDSGD 395
+L + INS + D KK+ M P ++ Q T + EA S T SG+
Sbjct: 426 VLQKTDPINSRSFDPKKYTASMEILPPENKRQRTEKGVDEASNSTLTKSGN 476
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 30.7 bits (66), Expect = 0.21
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 498 EATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLI 605
E +QS+ + G+ Q + L S NN ERAV++++
Sbjct: 642 EENVQSLCEFGFTVAQARKGLLESNNNIERAVDWIL 677
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 28.7 bits (61), Expect = 0.84
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 207 VADHQRLIYAGKILLDDNKINSYNIDEKKF 296
V D+ +IY G+++++ NK NID + F
Sbjct: 85 VPDNGLVIYCGEVIMEGNKTRKLNIDFEPF 114
>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
Mud1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 474 NTTSDAELEATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLI 605
N +D L + I ++ MG+D + QAL A+ + + A +L+
Sbjct: 289 NPPTDPGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 332
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = +3
Query: 108 KTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLI---YAGKILLDDNKINSY- 275
K Q+ + IDPE + + ++KG D +AD + + +I++ I+ Y
Sbjct: 1421 KRSAQEWANLNIDPEADLLIFVGRWTLQKGIDLIADITPTLLENFNSQIVVVGPVIDLYG 1480
Query: 276 NIDEKKFIVIMVTKPKVSESQPTSTSIP 359
+KF +M P S+P T +P
Sbjct: 1481 KFAAEKFTALMKKYPGRIYSRPLFTQLP 1508
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/97 (20%), Positives = 38/97 (39%)
Frame = +3
Query: 105 LKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYNID 284
++ LQ + P ++V I+ E + D + L Y K +N + YN+D
Sbjct: 1 MRELQGDDSSRKSPPSDSVVKNSSPIDYEHSLKSLQDERTLNYPNKQFNSENPSSYYNMD 60
Query: 285 EKKFIVIMVTKPKVSESQPTSTSIPEAGESASTDSGD 395
+ + + ES +S + +S + GD
Sbjct: 61 DSGELCNFELEKDSLESMIHESSTALSAQSNTAQDGD 97
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 288 KKFIVIMVTKPKVSESQPTSTSIPEAGESASTDS 389
K IVI+ + K+SE P + S+ GES + S
Sbjct: 103 KSKIVILGLRSKLSEQNPLAESVSNFGESVNNFS 136
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 468 TPNTTSDAELEATIQSIMDMGYDRPQVEQALRASFNNRERAVEYL 602
T +TS + + I S + YD +Q++ A NN +V ++
Sbjct: 674 TEESTSSSSFSSLITSPASLQYDENPFKQSVVAELNNNSSSVPFV 718
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 318 PKVSESQPTSTSIPEAGESASTDS 389
P + S PT+ S P AGE AS D+
Sbjct: 252 PDSNTSTPTTRSEPLAGEGASIDA 275
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 126 TFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYNIDEKKF 296
TF I IDPE+ ALK + KD +A +R + K+++ ++++ +KF
Sbjct: 253 TFPIGIDPEKFSDALKSDVV----KDRIASIERRLQGVKVIVGVDRLDYIKGVPQKF 305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,995
Number of Sequences: 5004
Number of extensions: 43644
Number of successful extensions: 177
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -