Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30186
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 101 3e-22
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 94 9e-20
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 91 6e-19
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 91 6e-19
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 90 1e-18
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 62 3e-10
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 62 3e-10
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 54 1e-07
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 51 8e-07
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 49 3e-06
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 48 6e-06
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 48 8e-06
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 48 8e-06
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 48 8e-06
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 48 8e-06
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 48 8e-06
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 48 8e-06
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 48 8e-06
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 48 8e-06
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 48 8e-06
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 48 8e-06
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 48 8e-06
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 48 8e-06
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 48 8e-06
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 48 8e-06
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 48 8e-06
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 48 8e-06
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 48 8e-06
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 48 8e-06
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 48 8e-06
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 47 1e-05
At5g16090.1 68418.m01880 ubiquitin family protein contains INTER... 45 4e-05
At2g32350.1 68415.m03954 ubiquitin family protein contains INTER... 44 1e-04
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 43 2e-04
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER... 42 5e-04
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 42 5e-04
At1g53950.1 68414.m06145 ubiquitin family protein contains INTER... 40 0.001
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 37 0.011
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 37 0.015
At4g03360.1 68417.m00458 ubiquitin family protein contains INTER... 36 0.019
At4g02950.1 68417.m00402 ubiquitin family protein contains INTER... 36 0.019
At4g05230.1 68417.m00789 ubiquitin family protein contains INTER... 33 0.14
At3g58460.1 68416.m06516 rhomboid family protein / ubiquitin-ass... 33 0.14
At3g29160.3 68416.m03654 Snf1-related protein kinase (KIN11) ide... 31 0.55
At3g29160.2 68416.m03653 Snf1-related protein kinase (KIN11) ide... 31 0.55
At3g29160.1 68416.m03652 Snf1-related protein kinase (KIN11) ide... 31 0.55
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl... 30 1.3
At4g02970.1 68417.m00404 ubiquitin family protein contains INTER... 30 1.7
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 29 2.2
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER... 29 2.9
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER... 29 2.9
At4g17370.1 68417.m02604 oxidoreductase family protein weak simi... 28 5.1
At3g01090.2 68416.m00014 Snf1-related protein kinase (KIN10) (SK... 28 5.1
At3g01090.1 68416.m00013 Snf1-related protein kinase (KIN10) (SK... 28 5.1
At4g05270.1 68417.m00797 ubiquitin family protein contains INTER... 28 6.8
At4g02510.1 68417.m00343 chloroplast outer membrane protein, put... 28 6.8
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl... 28 6.8
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform I GI:1914683 from [Daucus carota]
Length = 378
Score = 101 bits (243), Expect = 3e-22
Identities = 69/191 (36%), Positives = 94/191 (49%), Gaps = 16/191 (8%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL F+IE+ P + V +K IE KG ++ A Q LI+ GK+L D+ +
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEE 60
Query: 273 YNIDEKKFIVIMVTKPKVSESQPTSTSIPEAGE-----------SASTDSGDXXXXXXXX 419
N+ E FIVIM++K K S S ++ S P SA T S
Sbjct: 61 NNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVPTSGTAT 120
Query: 420 XXXXXXXXXXXXRV--TETPNTTSDAELEATIQSIMDMG---YDRPQVEQALRASFNNRE 584
V N + LE+T+Q I+DMG +DR V +ALRA+FNN E
Sbjct: 121 AAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPE 180
Query: 585 RAVEYLITGIP 617
RAVEYL +GIP
Sbjct: 181 RAVEYLYSGIP 191
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 477 TTSDAELEATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLI 605
T + E EA I+ + MG+DR V + A N E A YL+
Sbjct: 328 TVTPEEREA-IERLEGMGFDRAMVLEVFFACNKNEELAANYLL 369
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 93.9 bits (223), Expect = 9e-20
Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 12/187 (6%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKD-FVADHQRLIYAGKILLDDNKIN 269
M +T+KTL+ F+I + P +T+ A+K IE +GKD + Q LI+ GK+L D+ +
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 270 SYNIDEKKFIVIMVTKPKVSES------QPTS--TSIPEAGESASTDSGDXXXXXXXXXX 425
+ E+ F+V+M++K K S QP S TS + ++T S
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQPVSATTSSTKPAAPSTTQSSPVPASPIPAQE 120
Query: 426 XXXXXXXXXXRVTETPNTTSDAELEATIQSIMDMG---YDRPQVEQALRASFNNRERAVE 596
+ T S + LE +Q IM+MG +D+ V +ALRA++NN ERAV+
Sbjct: 121 QPAAQTDTYGQAAST--LVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVD 178
Query: 597 YLITGIP 617
YL +GIP
Sbjct: 179 YLYSGIP 185
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 489 AELEATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLI 605
AE EA IQ + MG+DR V +A A N E A YL+
Sbjct: 320 AEQEA-IQRLEAMGFDRALVIEAFLACDRNEELAANYLL 357
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 91.1 bits (216), Expect = 6e-19
Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 16/191 (8%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKD-FVADHQRLIYAGKILLDDNKIN 269
M +T+KTL+ F+I + P +T+ A+K IE +GKD + Q LI+ GK+L D+ +
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 270 SYNIDEKKFIVIMVTKPKVSES------QPTSTSIPEAGESAST-DSGDXXXXXXXXXXX 428
+ E+ F+V+M++K K S Q +S S P + ++ST +
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPAS 120
Query: 429 XXXXXXXXXRVTET-----PNTTSDAELEATIQSIMDMG---YDRPQVEQALRASFNNRE 584
T+T S + LE +Q IM+MG +D+ V +ALRA++NN E
Sbjct: 121 PIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPE 180
Query: 585 RAVEYLITGIP 617
RAV+YL +GIP
Sbjct: 181 RAVDYLYSGIP 191
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 489 AELEATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLI 605
AE EA IQ + MG+DR V +A A N E A YL+
Sbjct: 306 AEQEA-IQRLEAMGFDRALVIEAFLACDRNEELAANYLL 343
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 91.1 bits (216), Expect = 6e-19
Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 16/191 (8%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKD-FVADHQRLIYAGKILLDDNKIN 269
M +T+KTL+ F+I + P +T+ A+K IE +GKD + Q LI+ GK+L D+ +
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 270 SYNIDEKKFIVIMVTKPKVSES------QPTSTSIPEAGESAST-DSGDXXXXXXXXXXX 428
+ E+ F+V+M++K K S Q +S S P + ++ST +
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPAS 120
Query: 429 XXXXXXXXXRVTET-----PNTTSDAELEATIQSIMDMG---YDRPQVEQALRASFNNRE 584
T+T S + LE +Q IM+MG +D+ V +ALRA++NN E
Sbjct: 121 PIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPE 180
Query: 585 RAVEYLITGIP 617
RAV+YL +GIP
Sbjct: 181 RAVDYLYSGIP 191
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 489 AELEATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLI 605
AE EA IQ + MG+DR V +A A N E A YL+
Sbjct: 326 AEQEA-IQRLEAMGFDRALVIEAFLACDRNEELAANYLL 363
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 90.2 bits (214), Expect = 1e-18
Identities = 61/189 (32%), Positives = 99/189 (52%), Gaps = 14/189 (7%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKD-FVADHQRLIYAGKILLDDNKIN 269
M +T+KTL+ F+I + P +T+ A+K IE + KD + Q LI+ GK+L D+ +
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 270 SYNIDEKKFIVIMVTKPKV------SESQPTST---SIPEAGESASTDSGDXXXXXXXXX 422
+ E+ F+V+M++K K S +QPTST +I +A + +
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNST 120
Query: 423 XXXXXXXXXXXRVTETPNT-TSDAELEATIQSIMDMG---YDRPQVEQALRASFNNRERA 590
+ +T S + +E +Q IM+MG +D+ V +ALRA++NN ERA
Sbjct: 121 PVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERA 180
Query: 591 VEYLITGIP 617
V+YL +GIP
Sbjct: 181 VDYLYSGIP 189
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKD-FVADHQRLIYAGKILLDDNKIN 269
M + +KTL+ F+IE+ PE++V +K IE +G D + A Q LI+ GK+L D+ I
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 270 SYNIDEKKFIVIMVTKPKVSESQPTSTS 353
+ E FIVIM+ K K + + +S S
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSAS 88
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/51 (60%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Frame = +3
Query: 474 NTTSDAELEATIQSIMDMG---YDRPQVEQALRASFNNRERAVEYLITGIP 617
N + + LE+TIQ I+DMG +DR V ALRA+FNN ERAVEYL TGIP
Sbjct: 180 NLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIP 230
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKD-FVADHQRLIYAGKILLDDNKIN 269
M + +KTL+ F+IE+ PE++V +K IE +G D + A Q LI+ GK+L D+ I
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 270 SYNIDEKKFIVIMVTKPKVSESQPTSTS 353
+ E FIVIM+ K K + + +S S
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSAS 88
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/51 (60%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Frame = +3
Query: 474 NTTSDAELEATIQSIMDMG---YDRPQVEQALRASFNNRERAVEYLITGIP 617
N + + LE+TIQ I+DMG +DR V ALRA+FNN ERAVEYL TGIP
Sbjct: 180 NLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIP 230
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/94 (31%), Positives = 54/94 (57%)
Frame = +3
Query: 99 VTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYN 278
+ +KTL +T+ +++ ETV K KI E G QRLI+ G++L DD+ ++ Y+
Sbjct: 26 LNIKTLDSRTYTFQVNKNETVLLFKEKIASETGVP--VGQQRLIFRGRVLKDDHPLSEYH 83
Query: 279 IDEKKFIVIMVTKPKVSESQPTSTSIPEAGESAS 380
++ + ++V +P +ES P S+ P G +A+
Sbjct: 84 LENGHTLHLIVRQP--AESAP-SSGTPSQGATAN 114
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 50.8 bits (116), Expect = 8e-07
Identities = 25/63 (39%), Positives = 40/63 (63%)
Frame = +3
Query: 96 LVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSY 275
++ +KTL + +I+I+P +T+ +K ++E ++G V QRLIYAGK L DD Y
Sbjct: 78 MIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPV--QQRLIYAGKQLADDKTAKDY 135
Query: 276 NID 284
NI+
Sbjct: 136 NIE 138
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/73 (34%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ LK KI+ ++G D QRLI+AGK L D +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNLKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 135 YNIQKESTLHLVL 147
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/73 (31%), Positives = 43/73 (58%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK D +
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--ISPDQQRLIFAGKQHEDGRTLAD 210
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 211 YNIQKESTLHLVL 223
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + LKTL +T +E++ +T+ +K KI+ +G D RLI+AGK L D +
Sbjct: 1 MQIFLKTLTGKTKVLEVESSDTIDNVKAKIQDIEG--IPPDQHRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YN+ E + +++
Sbjct: 59 YNVQEDSTLHLLL 71
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/64 (37%), Positives = 40/64 (62%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL ++ IEI+ +T++ +K +IE ++G V HQR++Y GK L DD
Sbjct: 1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPV--HQRIVYTGKQLADDLTAKH 58
Query: 273 YNID 284
YN++
Sbjct: 59 YNLE 62
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 135 YNIQKESTLHLVL 147
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 211 YNIQKESTLHLVL 223
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 286
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 287 YNIQKESTLHLVL 299
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 362
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 363 YNIQKESTLHLVL 375
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 135 YNIQKESTLHLVL 147
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 211 YNIQKESTLHLVL 223
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 286
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 287 YNIQKESTLHLVL 299
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 135 YNIQKESTLHLVL 147
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 211 YNIQKESTLHLVL 223
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 286
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 287 YNIQKESTLHLVL 299
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 135 YNIQKESTLHLVL 147
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 211 YNIQKESTLHLVL 223
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 135 YNIQKESTLHLVL 147
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 211 YNIQKESTLHLVL 223
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 286
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 287 YNIQKESTLHLVL 299
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 362
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 363 YNIQKESTLHLVL 375
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 135 YNIQKESTLHLVL 147
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 211 YNIQKESTLHLVL 223
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 286
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 287 YNIQKESTLHLVL 299
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 135 YNIQKESTLHLVL 147
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 211 YNIQKESTLHLVL 223
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 286
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 287 YNIQKESTLHLVL 299
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 362
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 363 YNIQKESTLHLVL 375
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 135 YNIQKESTLHLVL 147
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 211 YNIQKESTLHLVL 223
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 286
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 287 YNIQKESTLHLVL 299
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 135 YNIQKESTLHLVL 147
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 211 YNIQKESTLHLVL 223
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 135 YNIQKESTLHLVL 147
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 211 YNIQKESTLHLVL 223
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 286
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 287 YNIQKESTLHLVL 299
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 135 YNIQKESTLHLVL 147
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 211 YNIQKESTLHLVL 223
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 135 YNIQKESTLHLVL 147
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 211 YNIQKESTLHLVL 223
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 286
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 287 YNIQKESTLHLVL 299
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Frame = +3
Query: 96 LVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSY 275
++ +KTL + +I+I+P +T+ +K ++E ++G V QRLIYAGK L DD Y
Sbjct: 78 MIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPV--QQRLIYAGKQLADDKTAKDY 135
Query: 276 NID 284
I+
Sbjct: 136 AIE 138
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVA-DHQRLIYAGKILLDDNKIN 269
M + +KTL +T +E++ +T+ +K KI+ K+++ D QRLI+AGK L D +
Sbjct: 152 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ---DKEWIPPDQQRLIFAGKQLEDGRTLA 208
Query: 270 SYNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 209 DYNIQKESTLHLVL 222
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/73 (31%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L+D + +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGK-QLEDGRTLA 133
Query: 273 YNIDEKKFIVIMV 311
NI ++ + +++
Sbjct: 134 DNIQKESTLHLVL 146
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKIL 248
M + +KTL +T +E++ T+ +K KI+ ++G D QRLI+AGK L
Sbjct: 228 MQIFVKTLTGKTITLEVESSGTIDNVKAKIQDKEG--IPPDQQRLIFAGKQL 277
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D +
Sbjct: 79 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGVP--PDQQRLIFAGKQLDDGRTLAD 136
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 137 YNIQKESTLHLVL 149
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/73 (31%), Positives = 44/73 (60%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + ++TL ++T +E++ +T +K KI+ ++G D QRLI+AGK L D +
Sbjct: 155 MQIFVRTLTRKTIALEVESSDTTDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 212
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 213 YNIQKESTLHLVL 225
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/71 (30%), Positives = 40/71 (56%)
Frame = +3
Query: 87 VKMLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKI 266
+ M + KTL ++T I++ +T+ +K KI+ +G D QRLI++GK+L D +
Sbjct: 1 MSMQIHAKTLTEKTITIDVVSSDTINNVKAKIQDIEG--IPLDQQRLIFSGKLLDDGRTL 58
Query: 267 NSYNIDEKKFI 299
Y+I + +
Sbjct: 59 ADYSIQKDSIL 69
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDD-NKIN 269
M + + TL +T +E++ +T+ +K KI+ +K + D QRLI+AG+ L D +
Sbjct: 231 MQIFVNTLTGKTITLEVESSDTIDNVKAKIQ-DKER-IQPDQQRLIFAGEQLEDGYYTLA 288
Query: 270 SYNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 289 DYNIQKESTLHLVL 302
>At5g16090.1 68418.m01880 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 142
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKG-KDFVADHQRLIYAGKILLDDNKIN 269
M + +KTL+ F+IE+ P ++V +K IE G ++ A Q LI+ + L D+ +
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 270 SYNIDEKKFIVIMVTKPKVSESQ 338
+ + +K I I++TK + E +
Sbjct: 61 ANKVFDKSVIAIIITKGCLEEME 83
>At2g32350.1 68415.m03954 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 233
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Frame = +3
Query: 90 KMLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDD-NKI 266
K+ VT+K +Q F +E+D ETV +LK KI + + +L Y+G L DD +
Sbjct: 74 KIHVTVKFPSKQ-FTVEVDRTETVSSLKDKIHIVENTPI--KRMQLYYSGIELADDYRNL 130
Query: 267 NSYNIDE-KKFIVIMVTKPKVSESQPTSTSI 356
N Y I E + +V + + + + PTS+S+
Sbjct: 131 NEYGITEFSEIVVFLKSINRAKDVAPTSSSL 161
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/68 (30%), Positives = 42/68 (61%)
Frame = +3
Query: 108 KTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYNIDE 287
KTL ++T ++++ +++ +K KI+ ++G D QRLI+AGK L D + YNI +
Sbjct: 8 KTLTEKTITLDVETSDSIHNVKAKIQNKEG--IPLDQQRLIFAGKQLEDGLTLADYNIQK 65
Query: 288 KKFIVIMV 311
+ + +++
Sbjct: 66 ESTLHLVL 73
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/73 (30%), Positives = 43/73 (58%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + ++TL +T +E+ +T+ +K KI+ ++G + QRLI+AGK L D +
Sbjct: 79 MQIFVQTLTGKTITLEVKSSDTIDNVKAKIQDKEG--ILPRQQRLIFAGKQLEDGRTLAD 136
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 137 YNIQKESTLHLVL 149
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/55 (30%), Positives = 33/55 (60%)
Frame = +3
Query: 123 QTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYNIDE 287
+T +E++ +T+ +K+KI+ + G D QRLI+ G++L+ + YNI +
Sbjct: 486 KTITLEVESSDTIDNVKVKIQHKVG--IPLDRQRLIFGGRVLVGSRTLLDYNIQK 538
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/73 (24%), Positives = 43/73 (58%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL ++ +E++ +T++ +K ++ ++G + QRLI+ GK L D +
Sbjct: 319 MQIFVKTLTRKRINLEVESWDTIENVKAMVQDKEGIQPQPNLQRLIFLGKELKDGCTLAD 378
Query: 273 YNIDEKKFIVIMV 311
Y+I ++ + +++
Sbjct: 379 YSIQKESTLHLVL 391
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +3
Query: 108 KTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAG-KILLDDNK-INSYNI 281
K T ++++ +T++ +K KI+ +G DHQRLI+ G ++ +DN+ + Y I
Sbjct: 165 KNFTSDTLTLKVESSDTIENVKAKIQDREG--LRPDHQRLIFHGEELFTEDNRTLADYGI 222
Query: 282 DEKKFIVI 305
+ + +
Sbjct: 223 RNRSTLCL 230
Score = 31.5 bits (68), Expect = 0.55
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = +3
Query: 123 QTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYNIDEKKFIV 302
+ F +E++ +T+ +K K++ +K + D RLI+AGK L + YNI +K +
Sbjct: 253 ENFILEVESSDTIDNVKAKLQ-DKER-IPMDLHRLIFAGKPLEGGRTLAHYNI-QKGSTL 309
Query: 303 IMVTK 317
+VT+
Sbjct: 310 YLVTR 314
>At3g13235.1 68416.m01666 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 414
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/92 (25%), Positives = 50/92 (54%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M +T+ T +Q +++D +ETV+ +K +EVE + Q+L+Y G + + +K+++
Sbjct: 1 MRITVMTAGEQIITLDVDSQETVENVKALLEVE--SNVPIQQQQLLYNGNEMGNSDKLSA 58
Query: 273 YNIDEKKFIVIMVTKPKVSESQPTSTSIPEAG 368
+ + +++MV+ S TS + + G
Sbjct: 59 LGVKDDDLLMMMVS--NASSGSATSAAGNDLG 88
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 474 NTTSDAELEATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLITG 611
NT+ E EA I ++++G+ R V QAL+ N E+A +L G
Sbjct: 369 NTSEGPEFEAKIAKLVELGFSRDSVIQALKLFEGNEEQAAGFLFGG 414
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL + +E++ +T++ +K KI+ ++G D QRLI+ GK L D +
Sbjct: 86 MFIFIKTLTGRRIVLEVENCDTIENIKAKIQDKQG--IPVDQQRLIFKGKQLEDGLTLAD 143
Query: 273 YNIDEKKFI 299
YNI +
Sbjct: 144 YNIQNDSIL 152
>At1g53950.1 68414.m06145 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 216
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = +3
Query: 84 SVKMLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNK 263
+V M + + T++++TF +E+ +T+K LK I + G D Q L + G L ++
Sbjct: 138 AVLMRIFVSTIKEKTFILEVKGSDTIKKLKSMIHDQGGPP--VDQQDLNHLGTKLKNNAT 195
Query: 264 INSYNIDEKKFIVIM 308
I+ YNI +VIM
Sbjct: 196 ISDYNIKPDANLVIM 210
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/64 (32%), Positives = 37/64 (57%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M++ +KTL +T E+ +T++ LK K E ++G + QRLI+ G+I + K S
Sbjct: 50 MMIFIKTLTGRTNTYEVKGSDTIRELKAKHEEKEG--IPVEQQRLIFQGRISIKTVKGKS 107
Query: 273 YNID 284
N++
Sbjct: 108 INLE 111
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 37.1 bits (82), Expect = 0.011
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Frame = +3
Query: 81 KSVKMLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDN 260
+ V + V ++ F + + TV++ K I + D A+ QRLIY G+IL DD
Sbjct: 14 EGVAVAVNVRCSNGTKFSVTTSLDSTVESFKELIA--QNSDVPANQQRLIYKGRILKDDQ 71
Query: 261 KINSYNIDEKKFIVIMVTKPKVSESQPTS-----TSIPEA-GESASTDSG 392
+ SY + + ++ S S P + T+ P+A G + S++ G
Sbjct: 72 TLLSYGLQADHTVHMVRGFVPSSPSAPAANAGNQTTAPQAVGSNDSSNLG 121
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 462 TETPNTTSDAELEATIQSIMDMG-YDRPQVEQALRASFNNRERAVEYLITGI 614
T PN + +Q + +MG YDR + +AL A+ N AVE L+ I
Sbjct: 485 TNQPNVPPEERFATQLQQLQEMGFYDRAENIRALLATNGNVNAAVERLLGSI 536
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 36.7 bits (81), Expect = 0.015
Identities = 28/95 (29%), Positives = 43/95 (45%)
Frame = +3
Query: 99 VTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYN 278
V ++ F ++ + TV++ K V + D A+ QRLIY G+IL DD + SY
Sbjct: 20 VNIRCSNGTKFSVKTSLDSTVESFKEL--VAQSSDVPANQQRLIYKGRILKDDQTLLSYG 77
Query: 279 IDEKKFIVIMVTKPKVSESQPTSTSIPEAGESAST 383
+ I + V S P+S P S +T
Sbjct: 78 LQADHTIHM------VRGSAPSSAPPPAPAASQTT 106
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 462 TETPNTTSDAELEATIQSIMDMG-YDRPQVEQALRASFNNRERAVEYLITGI 614
T N + +Q + +MG YDR + +AL A+ N AVE L+ I
Sbjct: 498 TNQSNVPPEERYATQLQQLQEMGFYDRAENIRALLATNGNVNAAVERLLGSI 549
>At4g03360.1 68417.m00458 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 284
Score = 36.3 bits (80), Expect = 0.019
Identities = 25/97 (25%), Positives = 45/97 (46%)
Frame = +3
Query: 99 VTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYN 278
V ++ +F I++ +TV +K KIE+ +G Q LI+ K+L D +
Sbjct: 4 VIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTP--VSKQILIFKRKVLQDHLNMFGCQ 61
Query: 279 IDEKKFIVIMVTKPKVSESQPTSTSIPEAGESASTDS 389
I I++ ++ + PT +P+ +S ST S
Sbjct: 62 IRHNSRILLSISP----DDNPTQNQVPQTNQSPSTPS 94
>At4g02950.1 68417.m00402 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 36.3 bits (80), Expect = 0.019
Identities = 25/97 (25%), Positives = 45/97 (46%)
Frame = +3
Query: 99 VTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYN 278
V ++ +F I++ +TV +K KIE+ +G Q LI+ K+L D +
Sbjct: 38 VIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTP--VSKQILIFKRKVLQDHLNMFGCQ 95
Query: 279 IDEKKFIVIMVTKPKVSESQPTSTSIPEAGESASTDS 389
I I++ ++ + PT +P+ +S ST S
Sbjct: 96 IRHNSRILLSISP----DDNPTQNQVPQTNQSPSTPS 128
>At4g05230.1 68417.m00789 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 206
Score = 33.5 bits (73), Expect = 0.14
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M V +T TF+IE+ +TV +K KI EK + Q L++ G +L D I
Sbjct: 1 MDVFFETRSGSTFEIELGYWDTVLEIKQKI--EKYQRIPVSKQTLLFQGNVLQDHLDIEQ 58
Query: 273 YNIDEKKFIVIMVTKPKVSES--QPTST-SIPEAGESASTDSG 392
I I + ++ P S + Q T P++ + T +G
Sbjct: 59 CVILNHSRIQLSISSPDQSRNNIQVFKTEQFPQSNSTEQTSNG 101
>At3g58460.1 68416.m06516 rhomboid family protein /
ubiquitin-associated (UBA)/TS-N domain-containing
protein contains Pfam profiles PF01694: Rhomboid family,
PF00627: UBA/TS-N domain
Length = 403
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +3
Query: 489 AELEATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLIT 608
A E IQ ++ MG+DR QVE AL A+ ++ AVE L++
Sbjct: 361 AASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS 400
>At3g29160.3 68416.m03654 Snf1-related protein kinase (KIN11)
identical to protein kinase AKin11 GI:1729444 from
[Arabidopsis thaliana]
Length = 359
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 471 PNTTSDAEL--EATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLI 605
P+T A+ E +Q +++MG+DR QV ++LR N YL+
Sbjct: 285 PDTVEQAKKINEEIVQEVVNMGFDRNQVLESLRNRTQNDATVTYYLL 331
>At3g29160.2 68416.m03653 Snf1-related protein kinase (KIN11)
identical to protein kinase AKin11 GI:1729444 from
[Arabidopsis thaliana]
Length = 512
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 471 PNTTSDAEL--EATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLI 605
P+T A+ E +Q +++MG+DR QV ++LR N YL+
Sbjct: 285 PDTVEQAKKINEEIVQEVVNMGFDRNQVLESLRNRTQNDATVTYYLL 331
>At3g29160.1 68416.m03652 Snf1-related protein kinase (KIN11)
identical to protein kinase AKin11 GI:1729444 from
[Arabidopsis thaliana]
Length = 512
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 471 PNTTSDAEL--EATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLI 605
P+T A+ E +Q +++MG+DR QV ++LR N YL+
Sbjct: 285 PDTVEQAKKINEEIVQEVVNMGFDRNQVLESLRNRTQNDATVTYYLL 331
>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
identical to ubiquitin-protein ligase 2 [Arabidopsis
thaliana] GI:7108523; E3, HECT-domain protein family;
similar to ubiquitin-protein ligase 2 GI:7108523 from
[Arabidopsis thaliana]
Length = 3658
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 498 EATIQSIMDMGYDRPQVEQAL-RASFNNRERAVEYLIT 608
EA + I++MG+ R + E AL R N+ E A+++L T
Sbjct: 1274 EAIVGMIVEMGFSRSRAEDALRRVGTNSVEMAMDWLFT 1311
>At4g02970.1 68417.m00404 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 270
Score = 29.9 bits (64), Expect = 1.7
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDD-NKIN 269
M V + T +F I ID ETV +K KI EK + Q L GK L DD +KI+
Sbjct: 1 MNVYIDTETGSSFSITIDFGETVLEIKEKI--EKSQGIPVSKQILYLDGKALEDDLHKID 58
Query: 270 SYNIDEKKFIV 302
+ E + ++
Sbjct: 59 YMILFESRLLL 69
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +3
Query: 123 QTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYNIDE 287
+T I + +TV+ L +IE + A QR+IY GK L +N + Y+I++
Sbjct: 106 KTIVIHAEKYDTVEKLHQRIEWKT--KIPALEQRVIYKGKQLQRENSLTYYSIEQ 158
>At4g05310.1 68417.m00809 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 415
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAG-KILLDDNKIN 269
M ++ L +F+IE++ +T+ +K KI EK + Q LI G IL +D ++
Sbjct: 1 MKFVVEILGGSSFEIEVERTDTLLVVKQKI--EKSQRVPVSKQTLIVDGIFILREDLNLD 58
Query: 270 SYNIDEKKFIVIMVTKPKVSESQPTSTSIPEAGES 374
I I + V+ P V+ IP+ +S
Sbjct: 59 QCQIFHDSQIQLEVS-PDVNPIHNNDDQIPQTEQS 92
>At4g03350.1 68417.m00457 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 263
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/55 (40%), Positives = 26/55 (47%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDD 257
M V + T +F I ID ETV +K KI EK + Q L GK L DD
Sbjct: 1 MNVDIDTETGSSFSITIDFGETVLQIKEKI--EKSQGIPVSKQILYLDGKALEDD 53
>At4g17370.1 68417.m02604 oxidoreductase family protein weak
similarity to SP|P26935 Myo-inositol 2-dehydrogenase (EC
1.1.1.18). {Bacillus subtilis}; contains Pfam profiles
PF01408: Oxidoreductase family NAD-binding Rossmann
fold, PF02894: Oxidoreductase family C-terminal
alpha/beta domain
Length = 368
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 199 FPFSTSIFNFNAFTVSSGSISI*NVCCCKVFSVTNIF 89
FPF + N+N F V++G + CC F + +F
Sbjct: 171 FPFLVKVNNWNRFNVNTGGTLVEK--CCHFFDLMRLF 205
>At3g01090.2 68416.m00014 Snf1-related protein kinase (KIN10)
(SKIN10) identical to Snf1-related protein kinase, KIN10
SP:Q38997 from [Arabidopsis thaliana]
Length = 535
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 471 PNTTSDAEL--EATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLI 605
P+T A+ E +Q +++MG+DR + ++LR N YLI
Sbjct: 307 PDTVQQAKKIDEEILQEVINMGFDRNHLIESLRNRTQNDGTVTYYLI 353
>At3g01090.1 68416.m00013 Snf1-related protein kinase (KIN10)
(SKIN10) identical to Snf1-related protein kinase, KIN10
SP:Q38997 from [Arabidopsis thaliana]
Length = 512
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 471 PNTTSDAEL--EATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLI 605
P+T A+ E +Q +++MG+DR + ++LR N YLI
Sbjct: 284 PDTVQQAKKIDEEILQEVINMGFDRNHLIESLRNRTQNDGTVTYYLI 330
>At4g05270.1 68417.m00797 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 129
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDN 260
M ++ L +F++E+D +T+ +K KI E+ + Q LI G ++L ++
Sbjct: 1 MKFLVENLNGSSFELEVDYRDTLLVVKQKI--ERSQHIPVSKQTLIVDGIVILRED 54
>At4g02510.1 68417.m00343 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 1503
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 237 GKILLDDNKINSYNIDEKKFIVIMVTKPKVSESQPTSTSIPE 362
G ++D + I + N+D K V++V +VSE T +IP+
Sbjct: 387 GDFVVDSSAIEAVNVDVAKPGVVVVGDVEVSEVLETDGNIPD 428
>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
identical to ubiquitin-protein ligase 1 [Arabidopsis
thaliana] GI:7108521; E3, HECT-domain protein family;
similar to GI:7108521, GB:AAF36454 from [Arabidopsis
thaliana]
Length = 3891
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 498 EATIQSIMDMGYDRPQVEQAL-RASFNNRERAVEYLIT 608
E+ + I++MG+ R + E AL R N+ E A+++L T
Sbjct: 1521 ESIVGMIVEMGFSRSRAEIALRRVGTNSVEMAMDWLFT 1558
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,159,431
Number of Sequences: 28952
Number of extensions: 211243
Number of successful extensions: 685
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -