Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30184
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11360| Best HMM Match : PDZ (HMM E-Value=0)                         35   0.056
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.69 
SB_48346| Best HMM Match : PDZ (HMM E-Value=1.5e-33)                   30   1.6  
SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)                 28   6.5  
SB_30514| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=1.2)              28   8.5  

>SB_11360| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 625

 Score = 35.1 bits (77), Expect = 0.056
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +3

Query: 3   DLDGRLQKGDFLQAVDGKDLSSADLMTAAATLKLCGNKAVI 125
           DL G L++GD ++AV+  DL++A    AAA LK  G+   I
Sbjct: 220 DLSGELRRGDQIKAVNDVDLTNATHEQAAAALKGAGSTVTI 260


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 9    DGRLQKGDFLQAVDGKDLSSADLMTAAATLKLCGNKAVIKVKR 137
            DGRLQKGD +  VD  D+S    M A   L+       ++V R
Sbjct: 1711 DGRLQKGDQILQVDDVDISEMKHMAAVNVLRATKKHVRLEVLR 1753



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 6    LDGRLQKGDFLQAVDGKDLSSADLMTAAATLKLCGNKAVIKVKR 137
            L G+LQ GD +Q V+GK L++A    A   ++       + +KR
Sbjct: 1403 LSGKLQVGDIIQEVNGKSLANASHQDAINIIRQESPAVQLLIKR 1446


>SB_48346| Best HMM Match : PDZ (HMM E-Value=1.5e-33)
          Length = 708

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 9   DGRLQKGDFLQAVDGKDLSSADL 77
           DGRL  GD + A++GKDLS A +
Sbjct: 92  DGRLTVGDKILAINGKDLSKASV 114


>SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1400

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 9   DGRLQKGDFLQAVDGKDLSSADLMTAAATLK-LCGNKAVIKVKRFK 143
           DGR+Q  D +  VDG  L     M AA TLK   G    + ++R K
Sbjct: 690 DGRIQVNDQIIEVDGVSLVGVTQMFAAVTLKHTSGTVRYVHLRRVK 735


>SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)
          Length = 354

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 184 SCRI*ISLFY*SCFISL 234
           +CRI IS+FY SC++SL
Sbjct: 91  TCRICISVFYLSCYVSL 107


>SB_30514| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=1.2)
          Length = 249

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 361 EFDIIKVVVDIINTMFTA*FRFFFNYHLYYIRRI*YMSRLLSKPAM*LLDNYW--*IRKT 534
           +F++ K V + I         F  + +  Y+ +  + SR+ +KPA  + D YW   I KT
Sbjct: 106 DFEVYKQVKNKIKNAIAT--EFNIDQNSLYLTKPTFFSRMTAKPAKTIHDEYWHPHIDKT 163

Query: 535 NY 540
            Y
Sbjct: 164 TY 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,793,761
Number of Sequences: 59808
Number of extensions: 252791
Number of successful extensions: 415
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)