Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30179
(703 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g71240.1 68414.m08222 expressed protein contains Pfam profile... 31 0.98
At5g25540.1 68418.m03039 expressed protein 29 3.0
At5g59200.1 68418.m07419 pentatricopeptide (PPR) repeat-containi... 28 5.2
At4g28650.1 68417.m04095 leucine-rich repeat transmembrane prote... 28 5.2
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 28 5.2
At5g11440.1 68418.m01336 hypothetical protein 28 6.9
At3g57940.1 68416.m06458 expressed protein contains Pfam profile... 28 6.9
At5g59150.1 68418.m07413 Ras-related GTP-binding protein, putati... 27 9.1
At3g46830.1 68416.m05083 Ras-related protein (RAB11A) / small GT... 27 9.1
At1g80840.1 68414.m09484 WRKY family transcription factor simila... 27 9.1
At1g67220.1 68414.m07651 zinc finger protein-related similar to ... 27 9.1
>At1g71240.1 68414.m08222 expressed protein contains Pfam profile:
PF04842 plant protein of unknown function (DUF639)
Length = 824
Score = 30.7 bits (66), Expect = 0.98
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +2
Query: 428 VLGDLDIP-KVKKQSLQHLKSSVEEDFQFLSELAAL-KAVTEKVESGAISADNIIDF--Y 595
+L D+ P K K QSL+ + ++DF+ L EL + + V G +S D II +
Sbjct: 81 ILSDVTSPLKKKSQSLKKIDLEDQQDFEDLEELLTVEQTVRSDTPKGFLSFDAIISIEQF 140
Query: 596 NLRINSL 616
+ R+N +
Sbjct: 141 SSRMNGI 147
>At5g25540.1 68418.m03039 expressed protein
Length = 175
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 185 LLITDPFNTPEAVVEVYISGISSLGSSADFKSKK--YPLVVDEYEPDTFDV 331
LL T P + E++ +VY++ L ++ + ++ Y +EY PDT D+
Sbjct: 91 LLATYPGLSQESINDVYLANTCDLDATIEMLNQLEIYSTEAEEYLPDTLDI 141
>At5g59200.1 68418.m07419 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 590
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 131 IFSASLGLSVEENSEWNGLLITDPFNTPEAVVE-VYISGISSL-GSSADFK 277
IF LGL ++ + W GL+IT+ N E+ +E IS ++++ G + F+
Sbjct: 12 IFINELGLLLQAHFTWIGLIITENCNGLESSIEREMISSLAAITGGPSTFR 62
>At4g28650.1 68417.m04095 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase 5,
Arabidopsis thaliana, PIR1:S27756
Length = 1013
Score = 28.3 bits (60), Expect = 5.2
Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 2/185 (1%)
Frame = +2
Query: 29 IIGINASGELS--ILHSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDP 202
+ G+N +G++S I +SF+ S FESLL + + + +NS L +
Sbjct: 78 LAGMNLTGKISDSISQLSSLVSFNISCNGFESLLPKSIPPLKSIDISQNSFSGSLFLFS- 136
Query: 203 FNTPEAVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGNKLV 382
N +V + SG + G+ + L V + + F + + F N KL
Sbjct: 137 -NESLGLVHLNASGNNLSGNLTEDLGNLVSLEVLDLRGNFF---QGSLPSSFKN-LQKLR 191
Query: 383 NINLSDSDQLLSYSNVLGDLDIPKVKKQSLQHLKSSVEEDFQFLSELAALKAVTEKVESG 562
+ LS ++ +VLG L + K + +F ++ L L K+ SG
Sbjct: 192 FLGLSGNNLTGELPSVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIGKL-SG 250
Query: 563 AISAD 577
I ++
Sbjct: 251 EIPSE 255
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 113 ESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEAVVE 229
E LL+ + LG EE +E N +L TDP TP+A+ E
Sbjct: 70 EDLLRYVVYTGLGW--EEGNEGN-ILFTDPLCTPKAIRE 105
>At5g11440.1 68418.m01336 hypothetical protein
Length = 155
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +2
Query: 80 SLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEAVVEVYISGISSLG 259
++ S K+ E K+I L L ++ + + LL+T + E++ +VY++ L
Sbjct: 39 TVEVSMPKKSSEMAYKQIRDDDLDLEMDIDMDIEYLLVTFSGLSQESITDVYLANGGDLE 98
Query: 260 SSADFKSKK--YPLVVDEYEPDTFDV 331
++ + ++ Y +E P+T D+
Sbjct: 99 ATIEMLNQLEIYSTESEENLPETLDI 124
>At3g57940.1 68416.m06458 expressed protein contains Pfam profile
PF05127: Putative ATPase (DUF699)
Length = 1024
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 35 GINASGELSILHSPESLSFSGSSKTFESL-LKEIFSASLGLSVEENSEWNGLLITD 199
G+ S ++++HSP+SL F + F+ + L E G +E S NGLL D
Sbjct: 440 GLEGSVLVNVIHSPDSLKFLRTGCLFKKIELTESIRYGSGDPIE--SWLNGLLCLD 493
>At5g59150.1 68418.m07413 Ras-related GTP-binding protein, putative
similar to Ras-related protein Rab11C SP:Q40193 from
[Lotus japonicus]
Length = 217
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 461 KQSLQHLKSSVEEDFQFLSELAALKAVTEKVESGAISADNI 583
K L HL+S EED Q L+E L +E+ A+ A N+
Sbjct: 126 KADLNHLRSVAEEDGQTLAETEGLSF----LETSALEATNV 162
>At3g46830.1 68416.m05083 Ras-related protein (RAB11A) / small
GTP-binding protein, putative identical to SP|Q96283
Ras-related protein Rab11A {Arabidopsis thaliana};
identical to cDNA Rab11 protein GI:2598228
Length = 217
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 461 KQSLQHLKSSVEEDFQFLSELAALKAVTEKVESGAISADNI 583
K L HL+S EED Q L+E L +E+ A+ A N+
Sbjct: 126 KSDLNHLRSVAEEDGQSLAEKEGLSF----LETSALEATNV 162
>At1g80840.1 68414.m09484 WRKY family transcription factor similar
to WRKY transcription factor GB:BAA87058 GI:6472585 from
[Nicotiana tabacum]
Length = 302
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 440 LDIPKVKKQSLQHLKSSVEEDFQFLSELAALKAVTEKV 553
+D P+V+K ++ + SS+ +D F + LAA AVT K+
Sbjct: 259 IDFPQVQKLLVEQMASSLTKDPNFTAALAA--AVTGKL 294
>At1g67220.1 68414.m07651 zinc finger protein-related similar to
SP|Q09472 E1A-associated protein p300 {Homo sapiens},
SP|Q92793 CREB-binding protein {Homo sapiens}; contains
Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
PHD-finger, PF02135: TAZ zinc finger
Length = 1357
Score = 27.5 bits (58), Expect = 9.1
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -2
Query: 228 STTASGVLNGSVINNPFHSEFSSTERPR--EAENISFKRLSKVLLEPEKLNDSGLWRMLS 55
+T + N + N P S +S E + E+ KR K EP KLN W +L
Sbjct: 17 NTESFDEFNQRLNNLPAESNVTSDEDAQFLESRKCQSKRWRKE--EPLKLNLRSPWNVLC 74
Query: 54 SPEALIPIIEEIKKT 10
SPE++ ++KT
Sbjct: 75 SPESISSAKFIVEKT 89
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,996,607
Number of Sequences: 28952
Number of extensions: 277490
Number of successful extensions: 942
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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