Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30177
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   3.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   3.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   3.4  
Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    28   7.8  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/85 (21%), Positives = 42/85 (49%)
 Frame = +3

Query: 78  VDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEER 257
           +D    +D  + + V +++  + NG    D N   ++    +   +  + + +++  ++ 
Sbjct: 450 IDFLESRDPKQGMYVLLMINMMING---VDRNISDDQMWTEETMWQARMRLRSEAAKDKL 506

Query: 258 NQAILDFVTKISVNTQTKDVAQKNL 332
           ++ I  F T  +VN+Q +DVAQ  L
Sbjct: 507 HKYIEKFTTSETVNSQIRDVAQNML 531


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/85 (21%), Positives = 42/85 (49%)
 Frame = +3

Query: 78  VDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEER 257
           +D    +D  + + V +++  + NG    D N   ++    +   +  + + +++  ++ 
Sbjct: 450 IDFLESRDPKQGMYVLLMINMMING---VDRNISDDQMWTEETMWQARMRLRSEAAKDKL 506

Query: 258 NQAILDFVTKISVNTQTKDVAQKNL 332
           ++ I  F T  +VN+Q +DVAQ  L
Sbjct: 507 HKYIEKFTTSETVNSQIRDVAQNML 531


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/85 (21%), Positives = 42/85 (49%)
 Frame = +3

Query: 78  VDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEER 257
           +D    +D  + + V +++  + NG    D N   ++    +   +  + + +++  ++ 
Sbjct: 33  IDFLESRDPKQGMYVLLMINMMING---VDRNISDDQMWTEETMWQARMRLRSEAAKDKL 89

Query: 258 NQAILDFVTKISVNTQTKDVAQKNL 332
           ++ I  F T  +VN+Q +DVAQ  L
Sbjct: 90  HKYIEKFTTSETVNSQIRDVAQNML 114


>Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical
           protein Y53C12B.1 protein.
          Length = 793

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +3

Query: 219 ELGISAKSTIEERNQAILDFVTKISVNTQTKDVAQKNLFDKLNIL 353
           ELG + +     + + +L F  K + N++T  VAQ+ L++ ++I+
Sbjct: 699 ELGSAIRRLDTRQIEILLQFTVKWNTNSRTSSVAQRVLYEIVHIV 743


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 577 HHHHGMLQHQNLTHRLRPT 633
           HHHHG   H + +  +RPT
Sbjct: 317 HHHHGTHHHHHYSSTVRPT 335


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 577 HHHHGMLQHQNLTHRLRPT 633
           HHHHG   H + +  +RPT
Sbjct: 317 HHHHGTHHHHHYSSTVRPT 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,305,257
Number of Sequences: 27780
Number of extensions: 221787
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)