Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30175
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   1.6  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   1.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   3.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   6.5  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.6  

>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 314 VSSI*KSQFSVKKNITWLQSSD 379
           V+ +  SQ S+KK +TWL SS+
Sbjct: 448 VAEVSLSQISIKKLVTWLMSSE 469


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 174 GSCQVSDILEVFGRYQIFQYVLICLPSVFVTMIDINYVFVAGDL 305
           G+    D+   F R     +  +C+P V+ T ++ NY F+A  L
Sbjct: 132 GATYPEDLNYKFMRLWNAAFGTLCIPLVYFTALNFNYSFLAATL 175


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 102  LQIDTIISHYFSSLNFHTFS-YIYLHTRMFIFVRI 1
            LQ+D  +S YF+   FH  + +I L  ++F+ V I
Sbjct: 1342 LQLDRFLSFYFAHPGFHLNNMFIMLSVQLFMVVLI 1376


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 460  KDFSINFN*QVQTLFDLDIEYKNYS*FDETLIVFTMI 570
            KD  +N N   + L D+D    NY     TL VF +I
Sbjct: 2048 KDCQLNSNFFEKILVDMDFNDNNYRTVANTLFVFGVI 2084


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 96  FVTLILTKTVRVSLKMTRESAKNVEKGSCQVSDILEVFGRYQIFQ 230
           F TL++   + VS++ +R + + +E   CQ  DIL    R   F+
Sbjct: 134 FPTLVIDG-IDVSVRFSRAAREQIEGWCCQNCDILNYSYRESCFK 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,121
Number of Sequences: 5004
Number of extensions: 41687
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)