Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30175
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_58187| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1735

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/78 (19%), Positives = 40/78 (51%)
 Frame = +3

Query: 111  LTKTVRVSLKMTRESAKNVEKGSCQVSDILEVFGRYQIFQYVLICLPSVFVTMIDINYVF 290
            +TK V+      ++  K   KG  +  +   +  R+ +++Y+   + S+ ++ IDI+   
Sbjct: 1656 VTKGVKPEPSQMKDIIK-CAKGEYRYIEYRYIKYRHILYRYIKYRISSIVISSIDISCYI 1714

Query: 291  VAGDLEYR*VQFKKVSFQ 344
                +EYR ++++ + ++
Sbjct: 1715 KYRYIEYRYIEYRYIEYR 1732


>SB_58187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 222 IFQYVLICLPSVFVTMIDINYVFVAGDLEY 311
           + QY L CLP   +T+I +  V  AG+  Y
Sbjct: 20  VIQYCLFCLPLCVLTVIRLCEVSKAGETHY 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,341,560
Number of Sequences: 59808
Number of extensions: 253320
Number of successful extensions: 357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)