Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30172
(791 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33) 36 0.028
SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033) 31 0.81
SB_41437| Best HMM Match : Cu2_monooxygen (HMM E-Value=1.5e-29) 30 1.9
SB_51116| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_29616| Best HMM Match : Orthopox_F14 (HMM E-Value=1.2) 30 1.9
SB_8281| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_51033| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29) 29 4.3
SB_36331| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014) 29 5.7
SB_29736| Best HMM Match : RVT_1 (HMM E-Value=0.39) 29 5.7
SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
Length = 717
Score = 36.3 bits (80), Expect = 0.028
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +1
Query: 643 SDELNKITNPLINTVDQTVKEKTYLVQAALNALTGFY 753
SD++ + +P T D +VKEKT L QAAL L+G Y
Sbjct: 467 SDKVKPVVSPPSRTPDASVKEKTGLTQAALYRLSGDY 503
>SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033)
Length = 757
Score = 31.5 bits (68), Expect = 0.81
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 361 DILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEE 492
D+L+E I GY + D+ DI + +L +++ G A+ST+ +
Sbjct: 630 DLLIEDIMEGYSILDMPKDIGLQQSLPGLVDLLPGAKAESTVRK 673
>SB_41437| Best HMM Match : Cu2_monooxygen (HMM E-Value=1.5e-29)
Length = 225
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 316 HLLLYFGFSCPFSLVSFCHLFQASFFPWPLI 224
H +L FG S P S F ++FQ + WP I
Sbjct: 98 HHMLLFGCSTPASKEGFWYVFQRLLYSWPSI 128
>SB_51116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/76 (17%), Positives = 38/76 (50%)
Frame = +1
Query: 310 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 489
V+VD+ +D D + ++VD+ V+ + ++ D++ + + ++V++ + ++
Sbjct: 121 VDVDVSVDSDVSVDVDVDVSVDVNVSVDAKVGVSADVDVSVDVDLSVDVDVSVDVDVDVD 180
Query: 490 ERNQAILDFVTKISVN 537
E +D + V+
Sbjct: 181 ESVNVSVDVDVSVDVD 196
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/66 (19%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Frame = +1
Query: 310 VNVDIDIDQ------DSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGIS 471
V+VD+D+D+ D +E ++VD+ V++ + D++ D++ + + ++V++ +
Sbjct: 69 VDVDVDVDESVDVSVDVDESVDVDVDVDESVDAVVDVDVSVDVDVSVDVDVSVDVDVSVD 128
Query: 472 AKSTIE 489
+ +++
Sbjct: 129 SDVSVD 134
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/76 (19%), Positives = 40/76 (52%)
Frame = +1
Query: 310 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 489
V+VD+ +D D + ++VD+ V+ + ++ D++ + + ++V+ + ++
Sbjct: 199 VDVDVSVDSDVSVDVDVDVSVDVNVSVDAKVGVSVDVDVSVDVDVSVDVDESVDVDVDVD 258
Query: 490 ERNQAILDFVTKISVN 537
E +++D ISV+
Sbjct: 259 E---SVVDVPVDISVD 271
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/76 (18%), Positives = 38/76 (50%)
Frame = +1
Query: 310 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 489
V+VD+D+ D + ++VD+ V++ N D++ D++ + + ++ ++ + +
Sbjct: 159 VSVDVDLSVDVDVSVDVDVDVDESVNVSVDVDVSVDVDVSVDVDVSVDSDVSVDVDVDVS 218
Query: 490 ERNQAILDFVTKISVN 537
+D +SV+
Sbjct: 219 VDVNVSVDAKVGVSVD 234
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/76 (21%), Positives = 38/76 (50%)
Frame = +1
Query: 310 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 489
VN+D+D+ D ++VD+ V+ G+ D++ D+ + + ++V++ + +
Sbjct: 408 VNIDVDVGVDVPVDVSVDVPVD-----VGV-DVSVDVSVDVGVDVSVDVDVSVDVDVDVS 461
Query: 490 ERNQAILDFVTKISVN 537
E A +D + V+
Sbjct: 462 ENVDADVDVSVDVDVD 477
>SB_29616| Best HMM Match : Orthopox_F14 (HMM E-Value=1.2)
Length = 171
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/52 (28%), Positives = 32/52 (61%)
Frame = +1
Query: 313 NVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGI 468
+VDID+D D + ++VD+ V+ + D++ D++ I + K ++V++ I
Sbjct: 107 DVDIDVDMDIDVDIDVDVDVDVDMDIDVDVDMDIDVDVDIDMDKDVDVDIDI 158
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/53 (24%), Positives = 34/53 (64%)
Frame = +1
Query: 310 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGI 468
++VDID+D D + +++D+ V+ + D++ D++K + + ++++LG+
Sbjct: 116 IDVDIDVDVDVDVDMDIDVDVDMDID----VDVDIDMDKDVDVDIDIDMDLGM 164
>SB_8281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/80 (18%), Positives = 38/80 (47%)
Frame = +1
Query: 310 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 489
V+VD+ +D D + + VD+ V+ + D++ D++ + + ++V +G+ ++
Sbjct: 36 VDVDVGVDVDVDVDVGVDVDVDVVVGVDVDVDVDVDVDVDVDVGVDVDVVVGVDVDVVVD 95
Query: 490 ERNQAILDFVTKISVNTQTK 549
+D V + V +
Sbjct: 96 VEVDVEVDVVVDVGVEVDVE 115
>SB_51033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 310 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 489
++VDIDID D + ++VDI V+ D+ DI+K I + ++V++ I I+
Sbjct: 7 MDVDIDIDMDVDIHMDVDIDVD--------IDVGIDIDKDIDMDVDIDVDIDIDMDVDID 58
>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
Length = 462
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 180 QAGKNMGEGRQEVKKIRGQGK-KEA*KR*QKETSEKGQEK 296
+ GKN R++ +K+ +GK K+ KR + ET+ +GQE+
Sbjct: 73 EEGKNRNTRRRQEQKLPEEGKNKKHQKRARTETTRRGQEQ 112
>SB_36331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 596
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +1
Query: 457 ELGISAKSTIEERN--QAILDFVT--KISVNTQTKDVAQKNLFDKLNILGVN 600
+L I+ +S + N Q DF+T ++NT+TK V N+ + ILG N
Sbjct: 544 DLVINTQSVVGYNNKLQKATDFMTLGANAINTETKPVGAHNMAHNMGILGCN 595
>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/69 (24%), Positives = 38/69 (55%)
Frame = +1
Query: 310 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 489
+++DIDID D + +++DI ++ + D++ DI+ I + ++++L + I+
Sbjct: 356 LDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDIDLDLDLDIDLDID 415
Query: 490 ERNQAILDF 516
R +L F
Sbjct: 416 IRGDKVLGF 424
>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
Length = 847
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 421 EKKI-ALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQTKDVAQKNLFD 576
E+KI +L+K +E EL ++ + ++ A+ TKIS+ TQ+ +K++FD
Sbjct: 792 EQKIESLEKKVE-ELELNQDDHAQSQSTALRKTETKISILTQSTKKQEKDIFD 843
>SB_29736| Best HMM Match : RVT_1 (HMM E-Value=0.39)
Length = 412
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/76 (19%), Positives = 39/76 (51%)
Frame = +1
Query: 310 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 489
V++DID+D D + ++VDI ++ + D++ DI+ + + +++++ I ++
Sbjct: 307 VDIDIDVDMDIDIDMDVDIGIDVDIDVDIDMDVDIDIDVDVDIDVDMDIDMDIDVDMDVD 366
Query: 490 ERNQAILDFVTKISVN 537
+D + V+
Sbjct: 367 VDMDVDVDIDMDVDVD 382
>SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 900
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 379 IYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEE 492
I GY + D+ DI + +L L++ LG A+ST+ +
Sbjct: 650 IMEGYSILDMPKDIGLQQSLPGLLDLLLGAKAESTVRK 687
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.133 0.356
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,206,173
Number of Sequences: 59808
Number of extensions: 247932
Number of successful extensions: 600
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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