Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30171
         (677 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0UJ30 Cluster: Putative uncharacterized protein precur...    38   0.30 
UniRef50_UPI0000DD857E Cluster: PREDICTED: hypothetical protein;...    33   6.4  

>UniRef50_A0UJ30 Cluster: Putative uncharacterized protein
           precursor; n=2; Burkholderia cepacia complex|Rep:
           Putative uncharacterized protein precursor -
           Burkholderia multivorans ATCC 17616
          Length = 721

 Score = 37.5 bits (83), Expect = 0.30
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +2

Query: 200 RSRFPRRCWKVPASEPPRPSPGCPASCXXXXXXXXXXXAPGPSLSGTPRRTTWCSRRPCS 379
           RSRFPR     P     RP+   P+ C             G    G+ RRTT C+ R C+
Sbjct: 105 RSRFPRAVRAAPPRAATRPARPAPSGCPSASCPSHARGTRGRPHRGSRRRTTPCAARRCA 164


>UniRef50_UPI0000DD857E Cluster: PREDICTED: hypothetical protein;
           n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
           Homo sapiens
          Length = 204

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = +2

Query: 206 RFPRR--CWKVPASEPPRPSPGCPASCXXXXXXXXXXXAPGPSLSGTPRRTTWCSRRP 373
           R PR   C   PA++PP P P  P              AP P+L   P  TT CS  P
Sbjct: 37  RMPRETSCAYKPATQPPSPGPHSPRPA---LRSSPRAAAPTPTLGTVPAATTECSPVP 91


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 463,520,937
Number of Sequences: 1657284
Number of extensions: 7112220
Number of successful extensions: 25838
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25773
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)