Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30171
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0715 - 5542648-5543219,5543352-5543544                           30   2.0  
07_03_1156 - 24416835-24417461                                         28   6.0  
07_03_1157 - 24419157-24419948                                         28   7.9  
02_02_0328 - 9004670-9004753,9004873-9004947,9005031-9005132,900...    28   7.9  

>01_01_0715 - 5542648-5543219,5543352-5543544
          Length = 254

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 230 VPASEPPRPSPGCPASCXXXXXXXXXXXAPGPSLSGTP 343
           VPA+  PRPSP  PA+             P P+ +G+P
Sbjct: 151 VPAAPTPRPSPPPPAAGTNGTARAPSPPVPAPAPAGSP 188


>07_03_1156 - 24416835-24417461
          Length = 208

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 220 VLESSRKRAAPPEPGLPSKLPRHNGAPHHKVGTWPIP 330
           V E  +    PP P +P +LP+H   PH  V   P P
Sbjct: 68  VPELPKPELPPPHPAVP-ELPKHEEPPHPVVPELPKP 103


>07_03_1157 - 24419157-24419948
          Length = 263

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 238 KRAAPPEPGLPSKLPRHNGAPHHKVGTWPIP 330
           K   PP P +  + P+H   PH  V   P P
Sbjct: 119 KHEEPPHPAVVPEFPKHEEPPHPAVPELPHP 149


>02_02_0328 -
           9004670-9004753,9004873-9004947,9005031-9005132,
           9005681-9005761,9006233-9006535
          Length = 214

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +2

Query: 212 PRRCWKVPAS-EPPRPSP 262
           PRRCW++ AS E P P+P
Sbjct: 38  PRRCWRLLASAEEPAPAP 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,290,840
Number of Sequences: 37544
Number of extensions: 220661
Number of successful extensions: 879
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)