Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30171
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)             28   8.0  
SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)                    28   8.0  
SB_14696| Best HMM Match : ETS_PEA3_N (HMM E-Value=8.5)                28   8.0  

>SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)
          Length = 733

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 235 RKRAAPPEPGLPSKLPRHNGAPHHK 309
           R+ A+ P PG  S L  H+  PHH+
Sbjct: 701 RRPASVPAPGTKSPLQLHSEQPHHQ 725


>SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)
          Length = 1311

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 37  SPPPVETQDGTLRITIPRDKLSTSP 111
           SPPP + +D  +   +P  KLST P
Sbjct: 715 SPPPKQVRDKQVASPVPEKKLSTPP 739


>SB_14696| Best HMM Match : ETS_PEA3_N (HMM E-Value=8.5)
          Length = 375

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 211 SKEVLESSRKRAAPPEPGLPSKLPRHNGAPHHKVGTWPIPF 333
           S E+  S RK+      G PSK PR     + + G  PI F
Sbjct: 4   SYEIKRSERKKRRRKGRGRPSKRPRREDEENSEKGRSPIDF 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,464,902
Number of Sequences: 59808
Number of extensions: 231233
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)