Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30171
         (677 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065462-1|BAC05721.1|  964|Homo sapiens seven transmembrane hel...    31   2.8  
D21205-1|BAA04747.1|  630|Homo sapiens estrogen responsive finge...    30   6.6  
BC042541-1|AAH42541.1|  630|Homo sapiens tripartite motif-contai...    30   6.6  
BC016924-1|AAH16924.1|  630|Homo sapiens tripartite motif-contai...    30   6.6  
AB208994-1|BAD92231.1|  644|Homo sapiens tripartite motif-contai...    30   6.6  

>AB065462-1|BAC05721.1|  964|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 964

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 19/53 (35%), Positives = 22/53 (41%)
 Frame = +2

Query: 218 RCWKVPASEPPRPSPGCPASCXXXXXXXXXXXAPGPSLSGTPRRTTWCSRRPC 376
           RC   P   PPRP+P  P+ C           +  PS    PR    C RRPC
Sbjct: 486 RCRHWPRGAPPRPAPARPSPCPPPASATGFSHS-NPSYR-VPRNPQLC-RRPC 535


>D21205-1|BAA04747.1|  630|Homo sapiens estrogen responsive finger
           protein protein.
          Length = 630

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 208 ISKEVLESSRKRAAPPEPGLPSKLPRHNGAPHHKV 312
           + K   E  + +  PP P LPSKLP   GAP   V
Sbjct: 380 VKKVSKEEKKSKKPPPVPALPSKLPTF-GAPEQLV 413


>BC042541-1|AAH42541.1|  630|Homo sapiens tripartite
           motif-containing 25 protein.
          Length = 630

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 208 ISKEVLESSRKRAAPPEPGLPSKLPRHNGAPHHKV 312
           + K   E  + +  PP P LPSKLP   GAP   V
Sbjct: 380 VKKVSKEEKKSKKPPPVPALPSKLPTF-GAPEQLV 413


>BC016924-1|AAH16924.1|  630|Homo sapiens tripartite
           motif-containing 25 protein.
          Length = 630

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 208 ISKEVLESSRKRAAPPEPGLPSKLPRHNGAPHHKV 312
           + K   E  + +  PP P LPSKLP   GAP   V
Sbjct: 380 VKKVSKEEKKSKKPPPVPALPSKLPTF-GAPEQLV 413


>AB208994-1|BAD92231.1|  644|Homo sapiens tripartite
           motif-containing 25 variant protein.
          Length = 644

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 208 ISKEVLESSRKRAAPPEPGLPSKLPRHNGAPHHKV 312
           + K   E  + +  PP P LPSKLP   GAP   V
Sbjct: 394 VKKVSKEEKKSKKPPPVPALPSKLPTF-GAPEQLV 427


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,424,364
Number of Sequences: 237096
Number of extensions: 1241164
Number of successful extensions: 5166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5143
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)