Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30171
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
 Frame = +2

Query: 212 PRRCWK--VPASEPPRPSPGCPASCXXXXXXXXXXXAPGPSLSGTPRRTTWCSRRPCSH 382
           PR C     PA+ PP P P  PA                P  SG P     C  RPC +
Sbjct: 129 PRTCCPPPTPAAPPPPPPPPPPAPEAPTQCCGSQPYGRTPCRSGCPNGDCGCG-RPCCY 186


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical
           protein F36H1.2b protein.
          Length = 1379

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 250 PPEPGLPSKLPRHNGAPH 303
           PP PG+   L RH G PH
Sbjct: 634 PPYPGIHGSLRRHCGVPH 651


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical
           protein F36H1.2a protein.
          Length = 1398

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 250 PPEPGLPSKLPRHNGAPH 303
           PP PG+   L RH G PH
Sbjct: 634 PPYPGIHGSLRRHCGVPH 651


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,343,048
Number of Sequences: 27780
Number of extensions: 162481
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)