Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30171
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19080.1 68415.m02228 metaxin-related contains 1 transmembran...    30   1.6  
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    28   6.5  
At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    27   8.6  
At1g27430.1 68414.m03343 GYF domain-containing protein contains ...    27   8.6  
At1g12810.1 68414.m01488 proline-rich family protein contains pr...    27   8.6  

>At2g19080.1 68415.m02228 metaxin-related contains 1 transmembrane
           domain; similar to Metaxin 1 (component of a preprotein
           import complex) (Swiss-Prot:P47802) [Mus musculus];
          Length = 315

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 205 KISKEVLESSRKRAAPPEPGLPSKLPRHNGAPHHK 309
           K+  E LE+S    +PP    PS  PR +  P  K
Sbjct: 232 KLKSEFLEASSSSPSPPLHSFPSSFPRKSSKPKSK 266


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 232 SRKRAAPPEPGLPSKLPRHNGAPHHKVGTWPIP 330
           S  +++PP P  P +LP H+ +P       P P
Sbjct: 748 SAMKSSPPAPPAPPRLPTHSASPPPPTAPPPPP 780


>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 37  SPPPVETQDGTLRITIPRDKLSTSPGQG 120
           SP   E QDGT + T+PR     SPG G
Sbjct: 517 SPKSAE-QDGTEKATVPRRHSLPSPGNG 543


>At1g27430.1 68414.m03343 GYF domain-containing protein contains
           Pfam profile: PF02213 GYF domain
          Length = 1531

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 120 SLSRAGGQLVPRYRYPQGAILSFDRRR 40
           SL  AG  L P +RYP+G +L   R++
Sbjct: 259 SLIGAGSALSPVFRYPRGKLLDMYRKQ 285


>At1g12810.1 68414.m01488 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 129

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 244 AAPPEPGLPSKLPRHNG-APHHKVGTWPIP 330
           +APP PG PS    H G  P    G +P P
Sbjct: 27  SAPPPPGYPSPPSHHEGYPPPQPYGGYPPP 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,875,122
Number of Sequences: 28952
Number of extensions: 150816
Number of successful extensions: 438
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)