Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30167
(527 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical pr... 28 4.8
U53139-1|AAS80341.1| 90|Caenorhabditis elegans Hypothetical pr... 27 6.3
AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical ... 27 6.3
U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical pr... 27 8.3
L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain pro... 27 8.3
DQ178242-1|ABA18181.1| 578|Caenorhabditis elegans Frizzled homo... 27 8.3
AF016413-2|ABA54421.1| 578|Caenorhabditis elegans Caenorhabditi... 27 8.3
AF016413-1|ABA54422.1| 550|Caenorhabditis elegans Caenorhabditi... 27 8.3
AB026113-1|BAA84678.1| 550|Caenorhabditis elegans Cfz2 protein. 27 8.3
>Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical
protein T02E9.3 protein.
Length = 763
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 84 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 263
FG L H G LP + S+ + ++++G + R+SGGSK+ +
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271
Query: 264 SH--SKRETRRRSP 299
H +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285
>U53139-1|AAS80341.1| 90|Caenorhabditis elegans Hypothetical
protein F18E3.11 protein.
Length = 90
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -2
Query: 439 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVS 278
STT RKSST PRH + + ++ + S L D N L+R+ S
Sbjct: 30 STTQVVSRKSSTSSDAPRHSLNITVG-EAEMCQITRNNSSNSLNDFNCLQRKNS 82
>AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical
protein VC5.2 protein.
Length = 588
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 297 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWR 428
P R+ +LS FF ++ SR+RRS + R D SW+
Sbjct: 150 PEKRRQELLSEFFASKPSRVRRSTMSRKIAREPTPLTPDMLSWQ 193
>U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical
protein K09H11.1 protein.
Length = 985
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 372 YIRTFGAVMHVLRKKPIASISAIQMGFDVASRVLNA 265
YIRT +VLRKKP S+ D +++NA
Sbjct: 264 YIRTVRGSQYVLRKKPSGSLLPKAHQVDREFKIMNA 299
>L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain
protein protein.
Length = 319
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 196 LPDSARLASALEAFRHNPADGSFXXXXXXXXX*TKCPKLRFLS 68
LPD + ++S+L HNP ++ TK PKL LS
Sbjct: 37 LPDDS-ISSSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLS 78
>DQ178242-1|ABA18181.1| 578|Caenorhabditis elegans Frizzled homolog
protein.
Length = 578
Score = 27.1 bits (57), Expect = 8.3
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 437 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF 273
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
>AF016413-2|ABA54421.1| 578|Caenorhabditis elegans Caenorhabditis
frizzled homologprotein 2, isoform a protein.
Length = 578
Score = 27.1 bits (57), Expect = 8.3
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 437 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF 273
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
>AF016413-1|ABA54422.1| 550|Caenorhabditis elegans Caenorhabditis
frizzled homologprotein 2, isoform b protein.
Length = 550
Score = 27.1 bits (57), Expect = 8.3
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 437 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF 273
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
>AB026113-1|BAA84678.1| 550|Caenorhabditis elegans Cfz2 protein.
Length = 550
Score = 27.1 bits (57), Expect = 8.3
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 437 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF 273
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,106,022
Number of Sequences: 27780
Number of extensions: 256019
Number of successful extensions: 868
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -