Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30167
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    30   0.84 
At3g53440.2 68416.m05898 expressed protein                             30   1.1  
At3g53440.1 68416.m05897 expressed protein                             30   1.1  
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta...    29   1.9  
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela...    29   2.6  
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    28   3.4  
At5g17160.1 68418.m02010 expressed protein                             27   5.9  
At4g35390.1 68417.m05027 DNA-binding protein-related contains Pf...    27   5.9  
At4g27120.2 68417.m03898 expressed protein                             27   5.9  
At4g27120.1 68417.m03897 expressed protein                             27   5.9  
At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containi...    27   5.9  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   5.9  
At5g03560.1 68418.m00314 expressed protein                             27   7.8  
At1g14740.1 68414.m01762 expressed protein                             27   7.8  

>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 415 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 242
           K S +  +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At3g53440.2 68416.m05898 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -2

Query: 418 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 239
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 238 LEPPDSRGSTVSIS 197
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At3g53440.1 68416.m05897 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -2

Query: 418 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 239
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 238 LEPPDSRGSTVSIS 197
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
           Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
           DNA repair protein (rad1); almost identical to 5' repair
           endonuclease (GI:8926611) [Arabidopsis thaliana]
          Length = 956

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
 Frame = -2

Query: 481 GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 302
           G S+ R +H+A + + +  ++   +TD +   +  E + D  S      KK       DP
Sbjct: 492 GSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKK-------DP 544

Query: 301 NGLRRRVSRFECETRLVKSHCLEPPDS--RGSTVSISLPDSA 182
             LRR +     +T   K   L  P++  + +  S S P  A
Sbjct: 545 TSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586


>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
           low similarity to nuclear matrix constituent protein 1
           (NMCP1) [Daucus carota] GI:2190187
          Length = 1042

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = -2

Query: 424 QERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 245
           +E K+S D S+  H  E    + S  A  KK+ +S+  +D    +  +S  E     +++
Sbjct: 95  EEIKASVDESDLTHMREKSAYV-SALAEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152

Query: 244 HCLEPPDSRGSTVS 203
            C E   S GST+S
Sbjct: 153 ECAETKVSAGSTMS 166


>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 3   VVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEAS 179
           +V+++    L+ C CD +      N      +H   ++   +K P AGL C    +A+ S
Sbjct: 633 LVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADCS 692

Query: 180 LAESGKD 200
               GK+
Sbjct: 693 PDSGGKE 699


>At5g17160.1 68418.m02010 expressed protein
          Length = 569

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
 Frame = -2

Query: 442 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECE 263
           PST  R  R+ +T  +EP+  ++L     SR  R   K+ + D+ D   + + V++ E +
Sbjct: 65  PSTATRTTRRKTTTKAEPQPSSQLV----SRSCRSTSKSLAGDM-DQENINKNVAQ-EMK 118

Query: 262 TRLVK--SHCLEPPDSRGSTVSISLPDS 185
           T  VK  ++ L+ P + GST   S   S
Sbjct: 119 TSNVKFEANVLKTP-AAGSTRKTSAATS 145


>At4g35390.1 68417.m05027 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 299

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -2

Query: 478 LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRD-P 302
           + LNRS+ D A   TTP     SS   S         P  R   ++ K K  +I  RD P
Sbjct: 30  MELNRSEADEAKAETTPTGGATSSATASGSSSGRR--PRGRPAGSKNKPKPPTIITRDSP 87

Query: 301 NGLRRRV 281
           N LR  V
Sbjct: 88  NVLRSHV 94


>At4g27120.2 68417.m03898 expressed protein
          Length = 298

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 105 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 281
           + RA GG ++        AS + +++ E+G      +  E+GG++ +          +RE
Sbjct: 47  VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106

Query: 282 TRRRSPFGSRRS 317
            +R++   +R S
Sbjct: 107 AQRQAEEATRES 118


>At4g27120.1 68417.m03897 expressed protein
          Length = 298

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 105 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 281
           + RA GG ++        AS + +++ E+G      +  E+GG++ +          +RE
Sbjct: 47  VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106

Query: 282 TRRRSPFGSRRS 317
            +R++   +R S
Sbjct: 107 AQRQAEEATRES 118


>At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 638

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/49 (38%), Positives = 21/49 (42%)
 Frame = +3

Query: 57  TAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDM 203
           T  Y    S G LVH L      A  PSA    N  +   SLAE+  DM
Sbjct: 13  TITYYHPMSIGLLVHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDM 61


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 166 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 306
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At5g03560.1 68418.m00314 expressed protein
          Length = 241

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
 Frame = -2

Query: 445 LPSTTPRQERKSSTDYS---EPRHRTELYPDLRSRDARVKKKTDSIDL 311
           L +++ R+E+K++  +S   +  H  +L P+LR R   V+ +TD I++
Sbjct: 64  LTASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSETDIINV 111


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 123 GAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK--QCDFTSRVSHSKRETRRRS 296
           G +L  + LC N+ K   SL + GK+++T     S   K  + DF +    +   ++R++
Sbjct: 67  GNELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDDKWVERDFFNLREMNPNSSKRKA 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,527,787
Number of Sequences: 28952
Number of extensions: 243908
Number of successful extensions: 692
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)